PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B03545.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 325aa MW: 33160 Da PI: 4.6586

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03545.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.7	5.2e-31	68	155	7	89
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....k 89 r ++hTkv+gR+RR+R+ a+ca r+ L++eLG+++d++t+ WLlqq++pai+++tgt++ +a ++ ++ + ++ ++ + Pahal.B03545.1 68 RYRDRHTKVEGRGRRIRMAAPCATRISRLTRELGHKSDGETVRWLLQQSEPAIIAATGTGTVPAIAVAGSDGVLRLPTEPAPaaadvE 155 678********************************************************88888555333333333322222212110 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	23.478	69	123	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.1E-24	70	132	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEPRAPGRGG EDAEPLYLAA EAVGNGTAAV DAMGSVEAGG SGLPKPEPVP VEFLGGGLQL 60 ANPRPAPRYR DRHTKVEGRG RRIRMAAPCA TRISRLTREL GHKSDGETVR WLLQQSEPAI 120 IAATGTGTVP AIAVAGSDGV LRLPTEPAPA AADVEQQEPA PKRRRKLQPT RAAAGASAPP 180 PAAYYPVVAD PLLQANGGGA ISMSSGLAPA SAPGVPAGAI PFLALPATGP GATGDGKQMI 240 PPAAVWMVPQ QAGAAGAANQ PTHFWAFPTN PELFNAANFQ QQAVYDAEQL AGNGEPQDQQ 300 PGGHQLGEGE DEEEIAVTDS SSEE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	166	PKRRRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803340.1	0.0	transcription factor PCF2-like
Swissprot	A2YXQ1	8e-85	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	8e-85	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A2S3H1F5	0.0	A0A2S3H1F5_9POAL; Uncharacterized protein
STRING	Pavir.Ba01284.1.p	1e-170	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-36	TCP family protein

Link Out ? help Back to Top
Phytozome	Pahal.B03545.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]