PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03525.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 271aa    MW: 28487.1 Da    PI: 7.3058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03525.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12106152354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e Er+RR+++N +f  Lr  +P+       +++Ka+ L  A +YI +L
  Pahal.B03525.1 106 ASHVESERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAARYIAEL 152
                     5899***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15106165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9106152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.33E-11107157No hitNo description
Gene3DG3DSA:4.10.280.106.0E-15107164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDEHLSPSSS SRPALLSFSE AASCTILELP SFEVPEQWLL ADVMAAGENE NDDVGGTPRP  60
AGGVHVLSPA DSELSKLPLP SPSAPAPAKR RGRKPGPRAA AGAAAASHVE SERQRREKLN  120
RRFCDLRAAV PTVSRMDKAS LLADAARYIA ELRARVAQLE ADARHHAPVA RWEPDSAGGD  180
AAAAVGGELY VRKVGRDAAV VRVTSGARHA PAWLMGALRS LELQVQHACV SRVHGVTTQD  240
VLVNLPAGAT ALQDHDGLRG ALLQRLEDSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-16107162863Transcription factor MYC2
5gnj_B6e-16107162863Transcription factor MYC2
5gnj_E6e-16107162863Transcription factor MYC2
5gnj_F6e-16107162863Transcription factor MYC2
5gnj_G6e-16107162863Transcription factor MYC2
5gnj_I6e-16107162863Transcription factor MYC2
5gnj_M6e-16107162863Transcription factor MYC2
5gnj_N6e-16107162863Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801647.10.0transcription factor MYC2-like
TrEMBLA0A2S3H1U50.0A0A2S3H1U5_9POAL; Uncharacterized protein
STRINGPavir.Ba01307.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-26bHLH family protein