PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03522.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 25496.7 Da PI: 6.6245 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.6e-11 | 85 | 131 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e Er+RR+++N +f Lr +P+ +++Ka+ L A +YI +L Pahal.B03522.1 85 ASHVESERQRREKLNCRFCDLRAAVPTV-----SRMDKASLLADAAQYIAEL 131 6899***********************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.015 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-15 | 85 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-9 | 85 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-15 | 86 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.36E-10 | 86 | 136 | No hit | No description |
SMART | SM00353 | 2.3E-10 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDEHLSPSSC SRPAPFSFSE ASCTILELPS FEVPEQWLLA DVVAAGENEN DDIAAAPSPS 60 APAPAPAKRR GRKPGPRPGA GAAAASHVES ERQRREKLNC RFCDLRAAVP TVSRMDKASL 120 LADAAQYIAE LHARVAQLEA DARHHAAVAR WEPASAGGDA AAAVGGELYV RKVGRDAAVV 180 RVTSGARHAR AWLLGALRSL ELQVQHACVS RARGVPTQDV LVDVPAGATA LQDDDDLRAA 240 LL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801647.1 | 1e-123 | transcription factor MYC2-like | ||||
TrEMBL | A0A2T8KR90 | 1e-135 | A0A2T8KR90_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J27331.1.p | 1e-129 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 7e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03522.1 |