PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03444.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 151aa MW: 17650.3 Da PI: 10.1055 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.3 | 1.3e-18 | 4 | 85 | 9 | 90 |
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + GF+vrk +++k+k +g++ + ++vC +eg+r+++k++ + ++ +rae rt+C+ ++ + +++ +++++v++l leHnH l+ Pahal.B03444.1 4 QKGFEVRKMYTNKRKSDGKVRSCRYVCANEGHRKKDKRD-HLTKYPRAEIRTDCQVRMGLIMDReKETYKVADLILEHNHMLQ 85 57**********************************999.9999**************9888777***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-14 | 4 | 84 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
LWGQKGFEVR KMYTNKRKSD GKVRSCRYVC ANEGHRKKDK RDHLTKYPRA EIRTDCQVRM 60 GLIMDREKET YKVADLILEH NHMLQLPQTS HLMVSQRKIS ELQGFEIETA DDAGIGPKAA 120 HELAYTLRDH KNYLRAKRQR EMAYGQAGSM L |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB108421 | 1e-129 | AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence. | |||
GenBank | AC077693 | 1e-129 | AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 1e-129 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-129 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694622.1 | 2e-89 | PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025876512.1 | 2e-88 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025876513.1 | 2e-88 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
Refseq | XP_025877975.1 | 2e-87 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2T8KVK9 | 1e-101 | A0A2T8KVK9_9POAL; Uncharacterized protein | ||||
STRING | OS10T0571900-00 | 5e-92 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03444.1 |