PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03320.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 407aa    MW: 42468.6 Da    PI: 8.3921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13334379655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Pahal.B03320.1 334 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 379
                     689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16331388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-13332383No hitNo description
Gene3DG3DSA:4.10.280.103.5E-15333387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-10334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MYGSPVPKDL NLPAAQPQPT RTPPPPPPQM SSPGLLRYRS APSTLLGEVM CGDQDFSGAA  60
AAAGAAGHCP EHVAADNVLA RFLAGHHAEI PDCKPTCPTA AAHFMEDAAS MAASQQQLMY  120
QSQQQMSAME GLYRNVSSGG TEHGAAAGAG GSSLLRQSSS PAGFLNHLNM DSGYGNMLRA  180
GMAGGFRNGV VSDARLKGQL SFSSRQGSVM SQISEVGSEE LDGGSSPEAA GNNGAARGYS  240
GIPGYPMGGS SGSWTDEQSP TSSGAKRPRD SGPAPQNGQR QQPLAPQLSL PGGSNGVGKQ  300
SSAEMAAIEK FLQFQDAVPC KIRAKRGCAT HPRSIAERVR RTKISERIRK LQELVPNMEK  360
QTNTADMLDL AVDYIKDLQK QVKVLNDGRA NCTCSAGKLL QNQFAS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699620.0EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803424.10.0transcription factor bHLH130-like
RefseqXP_025803426.10.0transcription factor bHLH130-like
TrEMBLA0A2S3H1710.0A0A2S3H171_9POAL; Uncharacterized protein
STRINGPavir.J00377.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-54bHLH family protein