PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B03309.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 419aa MW: 44866.6 Da PI: 6.8746

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03309.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	246	265	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Pahal.B03309.1 246 FSCPVCFKTFNRYNNMQMHM 265 89*****************9 PP
2	zf-C2H2	11	0.0013	332	352	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ Pahal.B03309.1 332 CRRCGKAFAVKGDWRTHEKNC 352 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.2E-6	246	265	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	246	273	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	248	268	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.05E-6	312	350	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-5	317	350	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.538	330	350	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MENLYTSFFK SHQHHHRYYY HPAAPPAPAV TPPAYSSSLP FFAAHLQPPT HTPAAPPSPP 60 LREALPLLSL APAASSRGIT REPGRRGRAA ADSDEDGDEE EEEEEGGPAA SSNNRHHGQQ 120 QRVGGLFADL NAKAAGDPMD VESGAGSSSA AGDVTVALRI GLPTTSAGSA DLIGARRRHQ 180 DGGAEEEDDD EGRNNGENGG GGEEEEEEGE AVAAPLGFPS APIGRLNKGQ YWIPTPSQIL 240 IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GIQPTAMLRL PCYCCAPGCR 300 NNIDHLRAKP LKDFRTLQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGRLWYCLC 360 GSEFKHKRSL KDHARAFGHG HGFVGGAGAS AGCGDDDDDG AVSDVDHDGG GGAAARSM*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MENLYTSFFK SHQHHHRYYY HPAAPPAPAV TPPAYSSSLP FFAAHLQPPT HTPAAPPSPP  60
LREALPLLSL APAASSRGIT REPGRRGRAA ADSDEDGDEE EEEEEGGPAA SSNNRHHGQQ  120
QRVGGLFADL NAKAAGDPMD VESGAGSSSA AGDVTVALRI GLPTTSAGSA DLIGARRRHQ  180
DGGAEEEDDD EGRNNGENGG GGEEEEEEGE AVAAPLGFPS APIGRLNKGQ YWIPTPSQIL  240
IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GIQPTAMLRL PCYCCAPGCR  300
NNIDHLRAKP LKDFRTLQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGRLWYCLC  360
GSEFKHKRSL KDHARAFGHG HGFVGGAGAS AGCGDDDDDG AVSDVDHDGG GGAAARSM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969661	0.0	EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799833.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-117	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2S3H0P3	0.0	A0A2S3H0P3_9POAL; Uncharacterized protein
STRING	Si029897m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-104	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pahal.B03309.1

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]