PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03216.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 456aa MW: 48855.4 Da PI: 7.7433 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.5 | 1e-17 | 173 | 222 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq Pahal.B03216.8 173 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 222 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-24 | 168 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-19 | 170 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.799 | 171 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-15 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.46E-17 | 173 | 226 | No hit | No description |
SMART | SM00353 | 1.9E-13 | 177 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MGIQGNKAAT HEHDFLSLYT ATTAAANKDS PLQLHDSKPL PPSQGSSFFL KTHDFLQPLE 60 KPGAPPPEPS PSLPAATSGA ESRHRHQPVT AAAAEQHALP PPGGVGTFSI CPAPVSVAPP 120 ASAAVVKAEP PLVLWGQPAA ALLPAARELT VRVDRKGGSC SDGGTDQRPN TTRSKHSATE 180 QRRRSKINDR FQILRELLPH NDQKRDKATF LLEVIEYIRF LQEKVQKYEA TFPEWNQENA 240 KLLPWSNMYF RSFWKNAQSK GQIPGDSLPD PSHFMRNGSS PGSNFTGKLD DNHNMVTSAA 300 ASGAQDQTET DRMASLCYRS TETPANITNN VLSQSQPQWT GPSPVDDCAV NSQMLNNQQL 360 AIDEGTISVS SQYSQELLNS LTHALQSSGV DLSQASISVQ INLGKRAVKR PAAGVPSKAP 420 TDPASSNEIG QQLAMLGGGA EDPSHAAKRH KPGNS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956811 | 0.0 | EU956811.1 Zea mays clone 1574597 transcription factor BIM2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801930.1 | 0.0 | transcription factor BIM2-like isoform X10 | ||||
TrEMBL | A0A1B6QD41 | 0.0 | A0A1B6QD41_SORBI; Uncharacterized protein | ||||
STRING | Pavir.J04606.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-63 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03216.8 |