PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03216.6
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 422aa    MW: 45546.2 Da    PI: 8.1367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03216.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.3e-18139188255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pahal.B03216.6 139 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 188
                     899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-24134209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-19136212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.799137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-15139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-16139192No hitNo description
SMARTSM003531.9E-13143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGIQGNKAAT HEHDFLSLYT ATTAAANKDS PLQLHDSKPL PPSQGHQLQW ALPFAGAGQA  60
RQPPPQQHQA PPDRKGRGGG GGVMESGSRS SGGAGFDDDD GLAARREVSS SLKELTVRVD  120
RKGGSCSDGG TDQRPNTTRS KHSATEQRRR SKINDRFQIL RELLPHNDQK RDKATFLLEV  180
IEYIRFLQEK VQKYEATFPE WNQENAKLLP WSNMYFRSFW KNAQSKGQIP GDSLPDPSHF  240
MRNGSSPGSN FTGKLDDNHN MVTSAAASGA QDQTETDRMA SLCYRSTETP ANITNNVLSQ  300
SQPQWTGPSP VDDCAVNSQM LNNQQLAIDE GTISVSSQYS QELLNSLTHA LQSSGVDLSQ  360
ASISVQINLG KRAVKRPAAG VPSKAPTDPA SSNEIGQQLA MLGGGAEDPS HAAKRHKPGN  420
S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9568110.0EU956811.1 Zea mays clone 1574597 transcription factor BIM2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801931.10.0transcription factor BIM2-like isoform X11
TrEMBLA0A2S3H0N90.0A0A2S3H0N9_9POAL; Uncharacterized protein
STRINGPavir.J04606.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-64BES1-interacting Myc-like protein 2