PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.B03216.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 36864.7 Da PI: 7.0718 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.1 | 6.8e-18 | 70 | 119 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq Pahal.B03216.3 70 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 119 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-24 | 65 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-19 | 65 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.799 | 68 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-15 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.09E-17 | 70 | 123 | No hit | No description |
SMART | SM00353 | 1.9E-13 | 74 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MGIQGNKAAT HEHDFLSLYT ATTAAANKDS PLQLHDSKPL PPSQELTVRV DRKGGSCSDG 60 GTDQRPNTTR SKHSATEQRR RSKINDRFQI LRELLPHNDQ KRDKATFLLE VIEYIRFLQE 120 KVQKYEATFP EWNQENAKLL PWSKGQIPGD SLPDPSHFMR NGSSPGSNFT GKLDDNHNMV 180 TSAAASGAQD QTETDRMASL CYRSTETPAN ITNNVLSQSQ PQWTGPSPVD DCAVNSQMLN 240 NQQLAIDEGT ISVSSQYSQE LLNSLTHALQ SSGVDLSQAS ISVQINLGKR AVKRPAAGVP 300 SKAPTDPASS NEIGQQLAML GGGAEDPSHA AKRHKPGNS* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT067694 | 0.0 | BT067694.1 Zea mays full-length cDNA clone ZM_BFc0130K07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801928.1 | 0.0 | transcription factor BIM2-like isoform X8 | ||||
TrEMBL | A0A2S3H0H7 | 0.0 | A0A2S3H0H7_9POAL; Uncharacterized protein | ||||
STRING | Si029604m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-65 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.B03216.3 |