PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03216.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 353aa    MW: 38525.6 Da    PI: 7.7162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03216.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH567.2e-1870119255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pahal.B03216.2  70 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 119
                     899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-2465140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1967143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.79968118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.69E-1770123No hitNo description
PfamPF000102.6E-1570119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1374124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGIQGNKAAT HEHDFLSLYT ATTAAANKDS PLQLHDSKPL PPSQELTVRV DRKGGSCSDG  60
GTDQRPNTTR SKHSATEQRR RSKINDRFQI LRELLPHNDQ KRDKATFLLE VIEYIRFLQE  120
KVQKYEATFP EWNQENAKLL PWSNMYFRSF WKNAQSKGQI PGDSLPDPSH FMRNGSSPGS  180
NFTGKLDDNH NMVTSAAASG AQDQTETDRM ASLCYRSTET PANITNNVLS QSQPQWTGPS  240
PVDDCAVNSQ MLNNQQLAID EGTISVSSQY SQELLNSLTH ALQSSGVDLS QASISVQINL  300
GKRAVKRPAA GVPSKAPTDP ASSNEIGQQL AMLGGGAEDP SHAAKRHKPG NS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9568110.0EU956811.1 Zea mays clone 1574597 transcription factor BIM2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801931.10.0transcription factor BIM2-like isoform X11
TrEMBLA0A2S3H0N90.0A0A2S3H0N9_9POAL; Uncharacterized protein
STRINGPavir.J04606.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-65BES1-interacting Myc-like protein 2