PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03216.10
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 512aa    MW: 54215.2 Da    PI: 7.5022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03216.10genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.2e-17242291255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pahal.B03216.10 242 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 291
                      899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-19237310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-24237312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.799240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-16242295No hitNo description
PfamPF000104.4E-15242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13246296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MGIQGNKAAT HEHDFLSLYT ATTAAANKDS PLQLHDSKPL PPSQGSSFFL KTHDFLQPLE  60
KPGAPPPEPS PSLPAATSGA ESRHRHQPVT AAAAEQHALP PPGGVGTFSI CPAPVSVAPP  120
ASAAVVKAEP PLVLWGQPAA ALLPAARGHQ LQWALPFAGA GQARQPPPQQ HQAPPDRKGR  180
GGGGGVMESG SRSSGGAGFD DDDGLAARRE VSSSLKELTV RVDRKGGSCS DGGTDQRPNT  240
TRSKHSATEQ RRRSKINDRF QILRELLPHN DQKRDKATFL LEVIEYIRFL QEKVQKYEAT  300
FPEWNQENAK LLPWSKGQIP GDSLPDPSHF MRNGSSPGSN FTGKLDDNHN MVTSAAASGA  360
QDQTETDRMA SLCYRSTETP ANITNNVLSQ SQPQWTGPSP VDDCAVNSQM LNNQQLAIDE  420
GTISVSSQYS QELLNSLTHA LQSSGVDLSQ ASISVQINLG KRAVKRPAAG VPSKAPTDPA  480
SSNEIGQQLA MLGGGAEDPS HAAKRHKPGN S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676940.0BT067694.1 Zea mays full-length cDNA clone ZM_BFc0130K07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801928.10.0transcription factor BIM2-like isoform X8
TrEMBLA0A2S3H0H70.0A0A2S3H0H7_9POAL; Uncharacterized protein
STRINGSi029604m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-62BES1-interacting Myc-like protein 2