PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03212.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 436aa    MW: 45574.9 Da    PI: 6.25
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03212.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09263311355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pahal.B03212.1 263 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 311
                     58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.03E-11258315No hitNo description
SuperFamilySSF474596.41E-17258328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16261327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-7263311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDMNESCEKG MEGNASSAGA GIPVEWQTQF SAAAFACPPA QQQQGHMMDS SFASAGLWAS  60
TSQAMALSDV GGAMSAARGG GGFLAPVPGF LPQGLGHFPV DSGFIERAAR ASCFGGGGGG  120
VMGAGAGFGA ADQNMNSAFS GSSEALLDHH RKDGNEKGEP ELGRNGHDAM PSSEAAGGDC  180
SSKGTSDSKK RRRPNEVMGG DQVQSSNLPA DSANESVQSK DKGEESSPAT TTGKSKGKGA  240
KETSESQKED YIHVRARRGQ ATNSHSLAER LRREKISERM KLLQDLVPGC SKVTGKAVML  300
DEIINYVQSL QRQVEFLSMK LATVNPRLDL NIEGLLSKDL LRFPGVPSSS LGFSPEMMHP  360
QLQLSQPGLI QGGAAGMANP DVFRRIIQAQ LNAKDGSQMP HALNGSFSDV AQMGYPSPLG  420
PPDLSIRPSQ DGFQM*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7267900.0KJ726790.1 Zea mays clone pUT2275 bHLH transcription factor (bHLH86) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800986.10.0transcription factor bHLH49-like isoform X2
TrEMBLA0A2S3H0H10.0A0A2S3H0H1_9POAL; Uncharacterized protein
STRINGSi029882m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-54bHLH family protein