PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03071.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 298aa    MW: 32237.1 Da    PI: 9.9324
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03071.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.21.1e-32251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++++e+++++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g++ ll+ 
  Pahal.B03071.1  25 FLTKTHQMVEEASTDEVISWAEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANDNFRRGEQGLLSG 110
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  Pahal.B03071.1 111 IRRRKST 117
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3515108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-5421114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3121114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-172548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2825114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-177688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEAEAAAAGQ PASSKQRATG GPAPFLTKTH QMVEEASTDE VISWAEQGRS FVVWKPVELA  60
RDLLPLHFKH CNFSSFVRQL NTYGFRKVVP DRWEFANDNF RRGEQGLLSG IRRRKSTTPQ  120
PSKSGGSAGA NAAFPPPLPP ASGTTSGGGN ERSSSSASSP PRADLTSENE QLKKDNRTLA  180
TELAQARRQC EELLGFLSRF LDVRQLDLGL LMQEDVRAAA GDAHQQQQRR AAADQLERGG  240
EEGKSVKLFG VLLKDAARKR GRCEEAAASE RPIKMIRVGE PWVGVPSSGP GRFGGEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-20251185109Heat shock factor protein 2
5d8l_B2e-20251185109Heat shock factor protein 2
5d8l_D2e-20251185109Heat shock factor protein 2
5d8l_F2e-20251185109Heat shock factor protein 2
5d8l_H2e-20251185109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277540.0KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802216.10.0heat stress transcription factor B-1-like isoform X1
SwissprotQ67TP91e-132HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A2S3H0630.0A0A2S3H063_9POAL; Uncharacterized protein
STRINGPavir.Bb02269.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-54heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]