PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 25717.2 Da PI: 7.0094 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.5e-09 | 158 | 198 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ +L++l+P +K++ a++L +A++Y+k L Pahal.B03060.1 158 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 198 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.675 | 149 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-14 | 150 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-15 | 156 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-6 | 159 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.09E-6 | 171 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0080126 | Biological Process | ovary septum development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEFDLLNYSP EAQLELMNTM LQLEQLTKLD GGHHSLTAPV SPPVSPVQTH AAHCFSPPAH 60 MSATATAGYQ DQYTPPAAYA GSTVGLEHLQ VDYVLSPCAD GGAPQPAGSP SPTSSADAMR 120 EVIFHIAALQ PVEIDPEAVR PPKRRNVRIS KDPQSVAARL RRERISERIR TLQRLVPGGT 180 KMDTASMLDE AIHYVKFLKS QVQSLERAAA ATHRAAYHPA LLHAPWHQYA VPHGDM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 144 | RPPKRR |
2 | 158 | 163 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956156 | 1e-160 | EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ726974 | 1e-160 | KJ726974.1 Zea mays clone pUT3675 bHLH transcription factor (bHLH150) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803362.1 | 1e-174 | transcription factor HEC2-like | ||||
Swissprot | Q9SND4 | 5e-42 | HEC2_ARATH; Transcription factor HEC2 | ||||
TrEMBL | A0A2S3H034 | 1e-172 | A0A2S3H034_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J21912.1.p | 1e-118 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 4e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03060.1 |
Publications ? help Back to Top | |||
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