PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03026.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 498aa    MW: 52638.4 Da    PI: 9.0114
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03026.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.8e-066587123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++Cg+ F r  nL+ H r+H
  Pahal.B03026.1 65 YVCEICGQGFQRDQNLQMHRRRH 87
                    9*********************9 PP
2zf-C2H211.60.00085144165223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C  C+k +  +s++k H++t+
  Pahal.B03026.1 144 ACARCSKAYAVHSDYKAHLKTC 165
                     6*******************98 PP
3zf-C2H210.80.0016173191523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr +++  H+ t+
  Pahal.B03026.1 173 DCGRVFSRVESFIEHQDTC 191
                     9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.26E-56288No hitNo description
Gene3DG3DSA:3.30.160.602.8E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6356587IPR007087Zinc finger, C2H2
SMARTSM003550.00326587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355110107137IPR015880Zinc finger, C2H2-like
SMARTSM00355230143170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MLGFCAPAAG SPPDDATPEP FRSLQIATTA AAATTKKKRR PAGTPDPDAE VVSLSPRTLL  60
ESDRYVCEIC GQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPSCLHHNPS  120
HALGDLVGIK KHFRRKHSGH RQWACARCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR  180
VESFIEHQDT CTAGRARADA SPACGGGGGG LATGSAGSQQ QAPPPAMSLS RTASSTSPSS  240
DVVISPVAWP GPPMPSPTAA AFHGRFDRVP SPRTPPSEHH RGGHTHNLEL QLMPPSCSVA  300
GGGAPGMPAF CGPQSSPAVS SRGNAAAAMH LQLSIGVCGG GSGDAGGRGG EALAAARAKQ  360
EEEAREQLRQ AVAEKAAADE ARAQARRHAE LAEQELASAK RMRRQAQVEL SRAHALREHA  420
VRQVNATLLQ ITCLGCRHKF RARPAPLADA APDVACSYVS SVVTEGGDAE VDEPLPLDAD  480
GASMRRRQHA MAMDIVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-16139193357Zinc finger protein JACKDAW
5b3h_F1e-16139193357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539KKKRR
23540KKKRRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803598.10.0protein indeterminate-domain 16-like
TrEMBLA0A2S3H0060.0A0A2S3H006_9POAL; Uncharacterized protein
STRINGPavir.Ba02057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-104indeterminate(ID)-domain 14