PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02861.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 481aa    MW: 51863 Da    PI: 9.0168
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02861.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-16138197155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Pahal.B02861.1 138 SIYRGVTRHRWTGRFEAHLWDkNSWNEtqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 197
                     57*******************888866656446*************************98 PP
2AP251.72.2e-16240291155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Pahal.B02861.1 240 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 291
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-12138197IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17138207IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-16139207IPR001471AP2/ERF domain
PROSITE profilePS5103220.719139205IPR001471AP2/ERF domain
SMARTSM003806.5E-27139211IPR001471AP2/ERF domain
PRINTSPR003676.7E-6140151IPR001471AP2/ERF domain
PfamPF008472.1E-12240291IPR001471AP2/ERF domain
CDDcd000181.91E-22240301No hitNo description
SuperFamilySSF541719.81E-18240301IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17241300IPR001471AP2/ERF domain
SMARTSM003801.7E-25241305IPR001471AP2/ERF domain
PROSITE profilePS5103218.36241299IPR001471AP2/ERF domain
PRINTSPR003676.7E-6281301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDQKISEREK AGCPHDSISL SRPSTSSAHL ASALLSKHQL ILPPHHPAIP IPLSLRIFKT  60
ATSRGHHSWP PTSPCSPPPP VSPSLCTVTM AKPRKNSTAA AAAANSNSAA AAGDAGVRVK  120
PKRTRKSVPR ESPSQRSSIY RGVTRHRWTG RFEAHLWDKN SWNETQNKKG KQVYLGAYDD  180
EEAAARAYDL AALKYWGPDT ILNFPASAYE EELKEMEGQS REEYIGSLRR KSSGFSRGVS  240
KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYATQEEAAM AYDMAAIEYR GLNAVTNFDL  300
SRYIKWLRPG ADGGAAAAQD PHPMLGGLAQ QQLLPPADAV IDAAAFQHDR RQGGAELPLP  360
SRTSLGHTPT TSALSLLLQS PKFKEMIERT SAAESGTTTS SSSSPQTPSP SPPPPSVQAQ  420
HQAARDGGAA SPQCGFPEDI QTFFGCEDVA GVGVGVDVDA LFFGDLAAYA SPAFHFELDL  480
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0551110.0BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799409.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-109AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2S3H0330.0A0A2S3H033_9POAL; Uncharacterized protein
STRINGPavir.Bb02213.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.18e-96ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]