PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02766.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 400aa    MW: 44770.2 Da    PI: 6.768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02766.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51141411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++eke+yf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+
  Pahal.B02766.1  14 LLPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKLASSGEKELYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107
                     579***************************.89***************88889999**************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkk+Lvfykgra kg ktdW+mheyr+
  Pahal.B02766.1 108 eGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEYRM 141
                     56667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5710172IPR003441NAC domain
PROSITE profilePS5100555.6614172IPR003441NAC domain
PfamPF023653.2E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDERSDMDKS DEVLLPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP  60
KLASSGEKEL YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEYR MPSLNDPSLP KTPKDKNIPA NDAWAICRIF KKPSSVAQRV  180
LSHSWSPQSM ATTEPELLSA LQSIQASHFA LESSSCSPNQ FNSQHCLQGR QQQKLNSSQD  240
GSSCKIINFN RSPSSTQLSE KDNHSSTIIL PFETQSLQKS SAVTSVLLSM APGIVNSMNE  300
ALPNSEMEQL EPSYGYTADW GIDTNGGVEN KDDDPYSRKP SNGFSSGIEC GSQRKIKFPF  360
DLEVDSPDDW TSSMPCDSIP CPPPPTEMSN SSSTEKYYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-521417817171NO APICAL MERISTEM PROTEIN
1ut4_B3e-521417817171NO APICAL MERISTEM PROTEIN
1ut7_A3e-521417817171NO APICAL MERISTEM PROTEIN
1ut7_B3e-521417817171NO APICAL MERISTEM PROTEIN
4dul_A3e-521417817171NAC domain-containing protein 19
4dul_B3e-521417817171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801988.10.0protein FEZ-like
SwissprotQ9ZVH02e-95FEZ_ARATH; Protein FEZ
TrEMBLA0A2T7ES970.0A0A2T7ES97_9POAL; Uncharacterized protein
STRINGPavir.Bb02181.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-97NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]