PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02748.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 350aa    MW: 36084.4 Da    PI: 6.7849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02748.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14116162354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riN  f++Lr+llP+      +K +Ka+ L ++ +++k+L
  Pahal.B02748.1 116 RSHSEAERRRRQRINGHFARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 162
                     78*************************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.882113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-12116162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-12116165No hitNo description
SuperFamilySSF474596.28E-15117169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14117169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-14119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.04E-5218266No hitNo description
Gene3DG3DSA:3.30.70.2609.9E-6218267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MMWDGGVEHG SQEAAHQLLP WLGAAPLAEP AAAAGFGAMG AYGACDGVSV GGLGLGHGGV  60
FGFGGFDAVP QQQQRAGAAE GSGKAVVSGL LGSLQAELGR MTAREMMDAK ALAASRSHSE  120
AERRRRQRIN GHFARLRSLL PNTTKTDKAS LLAEVLDHVK ELKRQTSAMM VAAAAAVAGG  180
GGDDDGGAGP ARMLPAEADE LAVDAAADRA GRLVVRASLC CEDRPDLIPD IVRALAALRM  240
RARRAEITTL GGRVRSVLLI TADEGAEDDQ GCDEDDDGRC PNARQRGGDG GHGRAASHRR  300
HECIASVQEA LRGVMDRRTA SSDTSSSGGG GGGSIKRQRM NYGAQEQCV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711890.0EU971189.1 Zea mays clone 359116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803043.10.0transcription factor bHLH30-like
TrEMBLA0A2S3GZG70.0A0A2S3GZG7_9POAL; Uncharacterized protein
STRINGPavir.Ba01821.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-35bHLH family protein