PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B02747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 257aa MW: 27680.6 Da PI: 6.5869 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.8 | 2.3e-35 | 96 | 172 | 3 | 80 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ lt+ s+ a + ++s ss Pahal.B02747.1 96 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLTEPSQRCAGGS-DASLSS 172 689***********************************************************966655222.111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.7E-34 | 97 | 171 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.922 | 97 | 155 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLPYPNPHHF GVSQEPPHPN PTGFPMLPLA AHLDQHYADH HFFPGHGQFN SETLEAVLRP 60 PRAAPESGPV VTAPQGGKNG AAAAGQGHAR ARKRPFRTDR HSKIRTAQGV RDRRMRLSLD 120 VARDFFALQD RLGFDKASKT VDWLLTQSKP AIDRLTEPSQ RCAGGSDASL SSPTSGAPNG 180 SGNKRGGLVE KAGTRNGRSA FMEHGCELDR LVSAAPALGE YYYAGLSEMM SNNGGEGDDD 240 GEYEEDGDDF LDGMQY* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM578624 | 1e-169 | KM578624.1 Plagiantha tenella isolate TK060-2 retarded palea 1 protein (rep1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804518.1 | 0.0 | transcription factor TB1-like | ||||
TrEMBL | A0A2S3GZP2 | 0.0 | A0A2S3GZP2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01820.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 2e-27 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B02747.1 |