PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B02742.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 143aa MW: 15238.2 Da PI: 8.6042 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 3.8e-05 | 9 | 31 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F++ L H+++H Pahal.B02742.1 9 HTCEYCKREFRSAQGLGGHMNVH 31 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.41E-5 | 7 | 35 | No hit | No description |
Pfam | PF13912 | 6.8E-6 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.221 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
VRRSSSSSHT CEYCKREFRS AQGLGGHMNV HRLDRARLIH HQCSSHRPAA LAPPPNPNPS 60 STVLDLLGSG CPCCRRAHGA AASNGGSAVP AVKLGICRFS SALFATTTQE FEVKNLELRR 120 GACSHGDGTE EILDLELRIG YS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ951655 | 5e-49 | JQ951655.1 Chrysopogon gryllus Ramosa1 (ra1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143449.1 | 9e-47 | ramosa 1 | ||||
TrEMBL | A0A2T8KQD1 | 9e-99 | A0A2T8KQD1_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G003927_P01 | 4e-46 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22243 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 3e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B02742.1 |