PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02724.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 284aa    MW: 31325 Da    PI: 4.9661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02724.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
   Pahal.B02724.1 14 KGPWTAEEDQKLVSFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.27.9e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  ++eE++  +d++ +lG++ W++Ia++++ gRt++++k++w+++
   Pahal.B02724.1  67 RGQLSEEEEKTVIDLHSELGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      67889*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.799961IPR017930Myb domain
SuperFamilySSF466891.24E-2711108IPR009057Homeodomain-like
SMARTSM007176.4E-121363IPR001005SANT/Myb domain
PfamPF002495.4E-141461IPR001005SANT/Myb domain
CDDcd001672.57E-81661No hitNo description
PROSITE profilePS5129427.65662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2565116IPR009057Homeodomain-like
SMARTSM007176.9E-1666114IPR001005SANT/Myb domain
PfamPF002493.7E-1667111IPR001005SANT/Myb domain
CDDcd001672.82E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGQL SEEEEKTVID LHSELGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPATHRPLQ PAPDSRTSGS PEEEKAIAEV TPPGFGHEAF CVDEVSMAHL LDDIVIPGDV  180
LDALPAADGG GVSTAYSPGS SSSSSSSSYT DDASAPASSG GSSIVDGEWP EWPQMVEWPE  240
STWLDDVVTG PTPWEFEDPF LTYQRIALFD HHETWNNSRA ELF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837351e-148BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBankBT0855211e-148BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBankBT0856251e-148BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802264.10.0transcription factor MYB20-like
TrEMBLA0A2S3GZJ90.0A0A2S3GZJ9_9POAL; Uncharacterized protein
STRINGPavir.Ba02148.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-86myb domain protein 20