PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02723.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 306aa    MW: 33798.1 Da    PI: 4.9661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02723.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-153885148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
   Pahal.B02723.1 38 KGPWTAEEDQKLVSFLLNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 85
                     79******************************99************97 PP
2Myb_DNA-binding55.71.2e-1794135447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++eE++  +d++++lG++ W++Ia++++ gRt++++k++w+++
   Pahal.B02723.1  94 LSEEEEKTVIDLHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 135
                      69*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-202987IPR009057Homeodomain-like
PROSITE profilePS5129413.9173385IPR017930Myb domain
SuperFamilySSF466897.11E-2735132IPR009057Homeodomain-like
SMARTSM007172.6E-113787IPR001005SANT/Myb domain
PfamPF002496.9E-143885IPR001005SANT/Myb domain
CDDcd001673.98E-84085No hitNo description
PROSITE profilePS5129427.62586140IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2588140IPR009057Homeodomain-like
SMARTSM007173.0E-1690138IPR001005SANT/Myb domain
PfamPF002495.4E-1694135IPR001005SANT/Myb domain
CDDcd001678.14E-1395136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MHAYLVLELP FLCESLLQPT TNLSMGRQPC CDKVGLKKGP WTAEEDQKLV SFLLNNGQCC  60
WRAVPKLAGL LRCGKSCRLR WTNYLRPDLK RGLLSEEEEK TVIDLHAELG NRWSKIASHL  120
PGRTDNEIKN HWNTHIKKKL RKMGIDPATH KPLQPAPLPQ DPAGSPEEEK IVTAVTPGHE  180
AFCTDDVPMA HLLDDIVFPG DVAGAQPAPS DGVTTAYSPD QSSSASSSSS YSASAEASSG  240
GSGSGSIDGE WPDLPPMDWP ESMWQLEDVV TGRTPWEFED PFLTYQRMAL FDHQETWTNS  300
KIELF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29361405108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837351e-144BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBankBT0855211e-144BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBankBT0856251e-144BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802247.10.0myb-related protein 315-like
RefseqXP_025802248.10.0myb-related protein 315-like
RefseqXP_025802249.10.0myb-related protein 315-like
RefseqXP_025802250.10.0myb-related protein 315-like
RefseqXP_025802251.10.0myb-related protein 315-like
RefseqXP_025802252.10.0myb-related protein 315-like
RefseqXP_025802253.10.0myb-related protein 315-like
RefseqXP_025802254.10.0myb-related protein 315-like
RefseqXP_025802255.10.0myb-related protein 315-like
RefseqXP_025802256.10.0myb-related protein 315-like
RefseqXP_025802257.10.0myb-related protein 315-like
RefseqXP_025802258.10.0myb-related protein 315-like
RefseqXP_025802260.10.0myb-related protein 315-like
RefseqXP_025802261.10.0myb-related protein 315-like
RefseqXP_025802262.10.0myb-related protein 315-like
RefseqXP_025802263.10.0myb-related protein 315-like
TrEMBLA0A2S3GZD40.0A0A2S3GZD4_9POAL; Uncharacterized protein
STRINGPavir.Ba02149.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.19e-85myb domain protein 20