PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02722.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 300aa    MW: 33432.7 Da    PI: 7.1255
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02722.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-154693148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
   Pahal.B02722.1 46 KGPWTAEEDQKLVSFLLNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 93
                     79******************************99************97 PP
2Myb_DNA-binding57.82.4e-1899143147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  ++eE++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
   Pahal.B02722.1  99 RGQLSEEEEKTVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 143
                      67889*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-203796IPR009057Homeodomain-like
PROSITE profilePS5129413.9174193IPR017930Myb domain
SuperFamilySSF466893.63E-2743140IPR009057Homeodomain-like
SMARTSM007172.6E-114595IPR001005SANT/Myb domain
PfamPF002496.7E-144693IPR001005SANT/Myb domain
CDDcd001672.63E-74893No hitNo description
PROSITE profilePS5129426.65294148IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2597148IPR009057Homeodomain-like
SMARTSM007171.4E-1598146IPR001005SANT/Myb domain
PfamPF002492.4E-1699143IPR001005SANT/Myb domain
CDDcd001671.10E-11103143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASRSTVKLY HHVLAPSTSH IKHKRSRKQK LAMGRQPCCD KVGLKKGPWT AEEDQKLVSF  60
LLNNGQCCWR AVPKLAGLLR CGKSCRLRWT NYLRPDLKRG QLSEEEEKTV IDLHAQLGNR  120
WSKIASHLPG RTDNEIKNHW NTHTKKKLRK MGIDPATHKS LQPAPPAQEL QPEEEKTAMS  180
GAGFGHEVPM VNLLDDDDDV VVEPPAVNSG ISTAYSPGPS CSSSSSPSSS SLSYYSSAAA  240
SSGGSSIVDG EWPEWPQMME WPEPMWWLDD VVTGPTSWEF EDPFVTYQSI ELFGHHETW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28441485108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837351e-153BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBankBT0855211e-153BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBankBT0856251e-153BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802266.10.0transcription factor MYB20-like
TrEMBLA0A2S3GZE50.0A0A2S3GZE5_9POAL; Uncharacterized protein
STRINGPavir.Ba02148.1.p1e-125(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-84myb domain protein 20