PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.B02607.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 254aa MW: 27193.2 Da PI: 10.2667 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 36.7 | 1.1e-11 | 50 | 144 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 r+wse De+ +L Gl ++a +g+ p ++a ++ ++ ++ +++ eK+rrL+ K+ + ++ e + ++ ++ls iW Pahal.B02607.1 50 VRVWSEADEVRILEGLAAYAAAHGAPPGRsQLHAAL-EGRGLDKAVFTVTEIYEKVRRLRTKYCNLRAAgGPPVPEGGADDGDEVRRYKLSTAIW 143 69**********************977662444444.4566677889999***************9999555667777888888999******** PP DUF573 97 g 97 g Pahal.B02607.1 144 G 144 8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.2E-16 | 50 | 144 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MPPTMSGAPD SPRDGILLLL PAPDAAGEKA HRAASQPGGA RGKKPAAGLV RVWSEADEVR 60 ILEGLAAYAA AHGAPPGRSQ LHAALEGRGL DKAVFTVTEI YEKVRRLRTK YCNLRAAGGP 120 PVPEGGADDG DEVRRYKLST AIWGDQPANV AKKGRSTSAD AMPLKAGGAS TRVRRGFEEL 180 QGLFPSLASE VEKITKDETL VPVLKRAFEL IDDQKAGELN AKVKKQKVRE VKTRMNQDAL 240 RVEVLKMLIR SMD* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT084259 | 2e-71 | BT084259.1 Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds. | |||
GenBank | JX428524 | 2e-71 | JX428524.1 Zea mays subsp. mays clone pUT3123 GBP11 GeBP type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825722.1 | 0.0 | uncharacterized protein LOC112901104 | ||||
TrEMBL | A0A2S3I504 | 0.0 | A0A2S3I504_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J29943.1.p | 1e-147 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14621 | 9 | 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.B02607.1 |