PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B02600.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 470aa MW: 54588.9 Da PI: 8.9632

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B02600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.9	1.4e-22	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+++YA+++GF+vrk++++k+k +g+ + ++vC keg+r+e+k++ + ++ +raetr+gC+ ++ + +++ g ++vt+l+leHnH l Pahal.B02600.1 12 FWEAYASRTGFEVRKRYTNKRKFDGKARSCRYVCAKEGHRKEDKRD-HLTKCPRAETRCGCEVRMSLALDQeLGYYKVTDLVLEHNHILH 100 9****************************************999.999****************9899***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-18	12	99	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.582	216	268	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0079	243	270	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MKFQSVEEAW IFWEAYASRT GFEVRKRYTN KRKFDGKARS CRYVCAKEGH RKEDKRDHLT 60 KCPRAETRCG CEVRMSLALD QELGYYKVTD LVLEHNHILH TPETWAACFM KDIFTLGMRS 120 TQLSESLNSD LKEYLKSNLD IIRFLKQFER VVQGKRNKEL DSTFDSRKKF PRIKMRTSML 180 LEASKLYTPI IFEVFQDEYE RSMRACSRLL DEPNKYRVTI ENLDKKPTFE ECEVIGNPLE 240 QSVICTCSQF SRIGILCGHA LKVLDSMNIK TLPTQYILKR WTREARHGTI QDNHGRNITE 300 NPMLDSMLRS RLLSHKFHSL TDQVAGSLDC CLLIDSTLDI LIKQVEEKMH ACRITLEDPC 360 AGHITNTNVE VSNDLMGIRL KKKEVRTSTS RRKRTWLDKK RMPRKKNESN MLTALVSKND 420 SLTAQITSDS CSRYNNTSVE EYGVISSFTQ LVTVILLYLN VQFDVSELF*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MKFQSVEEAW IFWEAYASRT GFEVRKRYTN KRKFDGKARS CRYVCAKEGH RKEDKRDHLT  60
KCPRAETRCG CEVRMSLALD QELGYYKVTD LVLEHNHILH TPETWAACFM KDIFTLGMRS  120
TQLSESLNSD LKEYLKSNLD IIRFLKQFER VVQGKRNKEL DSTFDSRKKF PRIKMRTSML  180
LEASKLYTPI IFEVFQDEYE RSMRACSRLL DEPNKYRVTI ENLDKKPTFE ECEVIGNPLE  240
QSVICTCSQF SRIGILCGHA LKVLDSMNIK TLPTQYILKR WTREARHGTI QDNHGRNITE  300
NPMLDSMLRS RLLSHKFHSL TDQVAGSLDC CLLIDSTLDI LIKQVEEKMH ACRITLEDPC  360
AGHITNTNVE VSNDLMGIRL KKKEVRTSTS RRKRTWLDKK RMPRKKNESN MLTALVSKND  420
SLTAQITSDS CSRYNNTSVE EYGVISSFTQ LVTVILLYLN VQFDVSELF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302770.1	1e-119	protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBL	A0A2T8JC79	0.0	A0A2T8JC79_9POAL; Uncharacterized protein
STRING	BRADI2G01705.1	1e-121	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4651	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-26	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.B02600.1