PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02506.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 606aa    MW: 66229.9 Da    PI: 6.687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02506.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06346371126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y +  C +f+  G C +G+ CkFaH+
  Pahal.B02506.1 346 YQRNVCFDFLNKGKCERGPECKFAHS 371
                     667788899999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073808.19E-3914239No hitNo description
SMARTSM003564.9E-4313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455313341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5317343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-7317341IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4345372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6345373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652346373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-6346372IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4346371IPR000571Zinc finger, CCCH-type
PfamPF046771.1E-35382498IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541976.43E-8388487IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.101.1E-4390463IPR011146HIT-like domain
PfamPF046767.2E-16531602IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAATPPAPAP PRILLAGDAH GRLHQLFKRV KSVNQSTGPF HALLCVGQFF SPEGDAEGAP  60
GDVADYLEGR AAVPIPTYFT GDYGPTAPRL LSKAAAGARG FAPGGIEICP NLFWLRGSNR  120
FTLHGLSVVY LSGKKGPGGP GCYSQDDIDA LRALAEEPGI VDLFLTNEWP TGVVNGADIS  180
NVPNQVLDPH GYDPVVAELV AEIKPRYHIA GTKGVFYSRE PYVNDSAAHV TRFIGLANVG  240
NKEKQKFIHA ISPTPASTMS SADIHAKPPN STLSPYAAPA QSVPIEEAPK RPADNTDAQY  300
WRYDVKRQRQ GEAEGGRLCF KFTSSGSCPR GSKCNFRHDE EAVEHYQRNV CFDFLNKGKC  360
ERGPECKFAH SLSGDTSIRD SRPRRRVESS CWFCLSSPDV ESHLVISIGE AYYCALAKGP  420
LVPNHVLMIP VEHCPSTLMM PSEAEVELAR YKNALVEYFE KQGKTTVFFE WVSQSSRHAN  480
LQAVPVPFPK ADAVNKIFHL AAKKLGFEFS VVNPDGGAKV ARESLISQSE SKSSLFYVEL  540
PEGKILLHNI DSNEKFPAQF GREVLAGLLS MADRADWRNC KLSKEEEIQM VDDFKQGFCE  600
FDPAE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665610.0BT066561.1 Zea mays full-length cDNA clone ZM_BFb0021F11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799608.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A2S3GZB00.0A0A2S3GZB0_9POAL; Uncharacterized protein
STRINGPavir.Bb02057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]