PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02496.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 311aa    MW: 34104.2 Da    PI: 9.378
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02496.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52231551129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhP+dee+v++yL++kv ++ +++  +i evd++++ePw+Lp k+k +e+ewyfF ++d+ky+tg r+nrat++gyWkatgkdke+++ 
  Pahal.B02496.1  23 LPPGFRFHPRDEEIVTFYLTPKVFQRGFTC-IAIGEVDLNRTEPWELPGKAKMGENEWYFFYQKDRKYPTGMRANRATEAGYWKATGKDKEIYRV 116
                     79**************************99.88***************99999*****************************************9 PP

             NAM  96 kgel.....vglkktLvfykgrapkgektdWvmheyrle 129
                      g +     +g+kktLvfykgrap+gekt+Wvmhe+rle
  Pahal.B02496.1 117 AGGVappviIGMKKTLVFYKGRAPRGEKTNWVMHEFRLE 155
                     555557777***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6017191IPR003441NAC domain
PROSITE profilePS5100556.79423191IPR003441NAC domain
PfamPF023654.8E-2724154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTKRTMGDQQ QPQGMSIGDS LKLPPGFRFH PRDEEIVTFY LTPKVFQRGF TCIAIGEVDL  60
NRTEPWELPG KAKMGENEWY FFYQKDRKYP TGMRANRATE AGYWKATGKD KEIYRVAGGV  120
APPVIIGMKK TLVFYKGRAP RGEKTNWVMH EFRLEGSSRL PCPTSSSTST GALKSSSASK  180
DEWVVCRVFH KTTGIKKVPA PAPSSYDIAM AYAGIDQSGI PMPMPMQYPI LPDFTMDPAI  240
PYYSTACASS ISVPPVMPPM ASMGSAGLHM NGAMFGNPIA NASSMSFFHQ MGMEAEGTSS  300
FIATPESRPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-482019717174NAC domain-containing protein 19
3swm_B2e-482019717174NAC domain-containing protein 19
3swm_C2e-482019717174NAC domain-containing protein 19
3swm_D2e-482019717174NAC domain-containing protein 19
3swp_A2e-482019717174NAC domain-containing protein 19
3swp_B2e-482019717174NAC domain-containing protein 19
3swp_C2e-482019717174NAC domain-containing protein 19
3swp_D2e-482019717174NAC domain-containing protein 19
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801540.10.0NAC domain-containing protein 79-like
SwissprotQ9FLR32e-75NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A2S3GZ790.0A0A2S3GZ79_9POAL; Uncharacterized protein
STRINGPavir.Ba02955.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.14e-75NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]