PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B02382.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HB-other | ||||||||
Protein Properties | Length: 381aa MW: 42050.2 Da PI: 6.9016 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.2 | 2.8e-08 | 14 | 75 | 7 | 56 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 f ++++ e+e+ ++ n ps++ + LA+k ++ +qV +WFqNrR+ ++ Pahal.B02382.1 14 FLPSEVAEMEARLQQlnNAIPSRAVLQTLADKFsasperagrvAIQPKQVWNWFQNRRYSHR 75 56778888999888666999***************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0025 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.106 | 13 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-9 | 13 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.18E-5 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-7 | 13 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.6E-6 | 14 | 75 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 4.6E-41 | 133 | 260 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGRPPSTGAP AFRFLPSEVA EMEARLQQLN NAIPSRAVLQ TLADKFSASP ERAGRVAIQP 60 KQVWNWFQNR RYSHRAKTTR AAPPPAAKMT PSGADHIQHA ANSSAFRAAQ PSAAAAHHGS 120 SPSTGKNPVE GVQVEFEAKS ARDGAWYDVA AFLSHRLFES GEPEVRVRFS GFGAEEDEWI 180 NVRKCVRQRS LPCEATECVA VLPGDLILCF QEGKEQALYF DARVLDAQRR RHDVRGCRCR 240 FLVRYDHDSS EEIVPLRKVC RRPETDYRLQ ILHAARAAAT MDAHTPPKEV KVEATSNEKS 300 PAEQKPPKQH KMMDVNTDEV SMVSSVEQEV TPGKTVAPLP SATPETRNSS SDIVMKEAEA 360 SSVVEDDDEV QVVEKMKDGE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 2e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-47 | 136 | 264 | 6 | 134 | SHH1 SAWADEE |
4iur_B | 2e-47 | 136 | 264 | 6 | 134 | SHH1 SAWADEE |
4iut_A | 2e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040281 | 0.0 | BT040281.1 Zea mays full-length cDNA clone ZM_BFc0075M16 mRNA, complete cds. | |||
GenBank | BT087672 | 0.0 | BT087672.1 Zea mays full-length cDNA clone ZM_BFb0153J12 mRNA, complete cds. | |||
GenBank | KJ727602 | 0.0 | KJ727602.1 Zea mays clone pUT5462 HB transcription factor (HB55) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802897.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2-like | ||||
Swissprot | Q8RWJ7 | 1e-123 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A2S3GYS7 | 0.0 | A0A2S3GYS7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7ER72 | 0.0 | A0A2T7ER72_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb01334.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4190 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-104 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B02382.1 |