PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02281.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 290aa    MW: 32450.8 Da    PI: 5.1545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02281.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.51.8e-0978127155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GVr ++ +grW AeIr p     +k+     + t+eeAa+a+ a  +k++ 
  Pahal.B02281.1  78 SKYRGVRLRE-SGRWQAEIRNPL----TKKREYSLHNTEEEAAAAYQAKWNKFRA 127
                     89*******9.7*********73....344444689**********988777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1078128IPR016177DNA-binding domain
PROSITE profilePS5103212.94579135IPR001471AP2/ERF domain
SMARTSM003803.1E-579142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-1179127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLRSRKMPPM RKVRIFCSDP DATDSSGDED DQNPKTEKKI IGVVLVPIKN CKTSKPQKTI  60
MPSGMKDLDG PEKKVSSSKY RGVRLRESGR WQAEIRNPLT KKREYSLHNT EEEAAAAYQA  120
KWNKFRAEML ALKAQPPVSE HAALSSLSLV SCISSSVSCK QKAQKAQNRE GSLMEVHCDP  180
IDESLRNFSL KPSEIPENVM LNLKDEHPVS DSVRPADGLP PDDFTKPEDM FKASDFIGAT  240
YKPLDDDYIG LADISHLPLP INDPEFDLDA ELDWSGFDFT SMEHELELL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956541.11e-150ethylene-responsive transcription factor ERF118
RefseqXP_004956542.11e-150ethylene-responsive transcription factor ERF118
RefseqXP_004956543.11e-150ethylene-responsive transcription factor ERF118
RefseqXP_004956544.11e-150ethylene-responsive transcription factor ERF118
RefseqXP_012698904.11e-150ethylene-responsive transcription factor ERF118
RefseqXP_022679546.11e-150ethylene-responsive transcription factor ERF118
TrEMBLA0A2S3GZ090.0A0A2S3GZ09_9POAL; Uncharacterized protein
STRINGPavir.Ba03000.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.26e-11ERF family protein