PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02218.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 353aa    MW: 38661 Da    PI: 10.219
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02218.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.23.7e-33133187155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl
  Pahal.B02218.1 133 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 187
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.738130190IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-31130188IPR009057Homeodomain-like
SuperFamilySSF466893.4E-16133189IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24133188IPR006447Myb domain, plants
PfamPF002492.6E-8135186IPR001005SANT/Myb domain
PfamPF143791.4E-20228274IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRGFQLQPPE LHNSRERERE RGREGERKSL PVESGSGSRE ARTSKKGKRR ERKPRDFFLG  60
FDPSLLGKEE KKALSLLFLL LRRAAGRAEE EEMFPPGLIH HRPDGPAPGD GAPRSGPVGG  120
PGGPSLVLTA DPKPRLRWTA DLHERFVDAV AQLGGPEKAT PKTILRTMGV KGLTLFHLKS  180
HLQKYRLGKQ SGKEGSEQSK DASYLLDAQT GMSVSPRVPA QDVKESQEVK EALRAQMEVQ  240
RRLHEQVEVQ KRVQIRMEAL QKYIDSILES ACKMVTEQFA SSGFSISDPD LPEISPGGVL  300
CGPTDTLSSS VFNQLSVSSI DSHSPGGKPS PSGIEGPPML LQKSPELKRR SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-19133189258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-19133189258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-19133189157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-19133189157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-19133189157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-19133189157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-19133189258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-19133189258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-19133189258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-19133189258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-19133189258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-19133189258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14452KKGKRRERK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804279.10.0protein PHR1-LIKE 2-like
SwissprotQ94A571e-71PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A2T8KPV90.0A0A2T8KPV9_9POAL; Uncharacterized protein
STRINGSi030441m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-69G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]