PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01977.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 314aa    MW: 33808.5 Da    PI: 7.617
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01977.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
   Pahal.B01977.1 14 KGPWSPEEDSKLKEYIHRNGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.72.4e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
   Pahal.B01977.1  69 GDFSDDEDRIICNLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.075962IPR017930Myb domain
SuperFamilySSF466898.98E-2611109IPR009057Homeodomain-like
SMARTSM007171.5E-111364IPR001005SANT/Myb domain
PfamPF002493.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-231569IPR009057Homeodomain-like
CDDcd001679.01E-91662No hitNo description
PROSITE profilePS5129421.79363117IPR017930Myb domain
SMARTSM007171.0E-1167115IPR001005SANT/Myb domain
PfamPF002494.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2370118IPR009057Homeodomain-like
CDDcd001671.56E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDSKLKEYIH RNGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRIIC NLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMHG  120
LQPYNHHSSK QQQLLFVTAS PAAAAPPEAA RPLSLQHLSS PHDYSHHYSG SYGSNNSTMS  180
VLSAAAGSRG FLLNGEHHTT ITSCLDSGGG GLGLYFDELC ATTSSSVHGQ GLTAESFVFG  240
GFQQLLEEDH HKALLLAAGA PNQLDQQYSA AASSCYDEAK PPLVSLTDGG NGAGGTSTSN  300
SFFYDSSYSN NES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956269.11e-151myb-related protein Hv1
TrEMBLA0A2S3GXU50.0A0A2S3GXU5_9POAL; Uncharacterized protein
STRINGSi030544m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.13e-76myb domain protein 68