PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B01902.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 1063aa MW: 114435 Da PI: 6.6967

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B01902.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	914	932	1	19
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 y+C+ Cg++Fs ++L++H Pahal.B01902.1 914 YQCKLCGERFSLEDELRSH 932 9****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51391	35.344	61	189	IPR006569	CID domain
Gene3D	G3DSA:1.25.40.90	3.1E-42	63	191	IPR008942	ENTH/VHS
SMART	SM00582	5.2E-42	64	186	IPR006569	CID domain
SuperFamily	SSF48464	1.13E-37	64	182	IPR008942	ENTH/VHS
CDD	cd03562	2.63E-41	68	175	No hit	No description
Pfam	PF04818	9.6E-10	117	170	IPR006903	RNA polymerase II-binding domain
Gene3D	G3DSA:3.30.160.60	5.9E-4	910	933	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.515	914	942	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence Send to blast
MRASASAAPM EASASARRSA PGPDPGAKKP RLGQPPPRDP RSSSYATASN GAAASAAEQA 60 LVDELLGQYR TALGELTFNS KPIITNLTII AGENLQAAKP IAALICANIL EVPSEQKLPS 120 LYLLDSIVKN IGKDYVKHFS ARLPEVFCKA YKQVDPSIHH SMRHLFGTWK GVFPPLPLQT 180 IEKELGFQTS ANGSSSAAPS RPDSQSPRPS NSIHVNPKYL EARQQLNQPT KGILGSGAKT 240 AVIADAGDDV ERPNRLGTDR SAGRRLDAPN ARPNIQRTQR DPFSNPVNEK QAGRDVRGLG 300 FSNISQQAVV GTGQVRSKPK GQDGIVGPYY ATGVGSSEEQ FDRRSNFYSS KDVRPSGSVR 360 LDSALLPTPS INSDRVGRSS SNKSWKHSEE EEYVWDDVHS QAADYSGNNT VRKGEWMADD 420 GNAKFASLQR AKWPEVGAVE HLDPNIHKLD SLPRFGLATG QDRRLAAYLD HEEYIHGKHE 480 VEPRIDREIM PDGQQFPPPR SSSLWVSHEK THPDIGLDPR ISRFSNQPGE RSTIYTGTMS 540 ASITSSVPVG LSGPYAGRSS LDSANSVPTR STETFGQQKH RYWSSSPPPA HSPSSTAPFA 600 RQSSPNPAEP DFYPSRPFSQ LGQSPQEEYS QRAAALAKDS HFIAQNVGLT QGQPSLQATQ 660 QAQKYPTLQS KLHSKPTDEV QASFSRENSP SLFRPSIQLG EVSLPTDLTP ISSDLTSASN 720 LLAGLIKSGF KPNNPSDFAS LGAQPLVPSG PLPHTLPSPP VASSSLQNAA GENTTLQTQT 780 TNTARPPLPP GLPPPASTQS AEKAAPLSSL LSSLVAKGLI STPATESSTA VPSQPNKSSV 840 NATNVTAAAM PLPAQMPSVG KEASNSASST PTNVLLPKGV EIKTGDLIGL EFKPEKLRKY 900 NEHVISSLFG DRNYQCKLCG ERFSLEDELR SHTTCRGSRE SETIYAGMAP KKWYPSKNSY 960 IDGSHEMEDS AEAFDVDLSS GEEVCEFMVP ADESQIICAL CGEPFDDFYS IEKGDWMYKD 1020 TVFLDSPNGE GSCGSNVESK EQVPIVHVRC MPRGSNDGME VD*

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence Send to blast

MRASASAAPM EASASARRSA PGPDPGAKKP RLGQPPPRDP RSSSYATASN GAAASAAEQA  60
LVDELLGQYR TALGELTFNS KPIITNLTII AGENLQAAKP IAALICANIL EVPSEQKLPS  120
LYLLDSIVKN IGKDYVKHFS ARLPEVFCKA YKQVDPSIHH SMRHLFGTWK GVFPPLPLQT  180
IEKELGFQTS ANGSSSAAPS RPDSQSPRPS NSIHVNPKYL EARQQLNQPT KGILGSGAKT  240
AVIADAGDDV ERPNRLGTDR SAGRRLDAPN ARPNIQRTQR DPFSNPVNEK QAGRDVRGLG  300
FSNISQQAVV GTGQVRSKPK GQDGIVGPYY ATGVGSSEEQ FDRRSNFYSS KDVRPSGSVR  360
LDSALLPTPS INSDRVGRSS SNKSWKHSEE EEYVWDDVHS QAADYSGNNT VRKGEWMADD  420
GNAKFASLQR AKWPEVGAVE HLDPNIHKLD SLPRFGLATG QDRRLAAYLD HEEYIHGKHE  480
VEPRIDREIM PDGQQFPPPR SSSLWVSHEK THPDIGLDPR ISRFSNQPGE RSTIYTGTMS  540
ASITSSVPVG LSGPYAGRSS LDSANSVPTR STETFGQQKH RYWSSSPPPA HSPSSTAPFA  600
RQSSPNPAEP DFYPSRPFSQ LGQSPQEEYS QRAAALAKDS HFIAQNVGLT QGQPSLQATQ  660
QAQKYPTLQS KLHSKPTDEV QASFSRENSP SLFRPSIQLG EVSLPTDLTP ISSDLTSASN  720
LLAGLIKSGF KPNNPSDFAS LGAQPLVPSG PLPHTLPSPP VASSSLQNAA GENTTLQTQT  780
TNTARPPLPP GLPPPASTQS AEKAAPLSSL LSSLVAKGLI STPATESSTA VPSQPNKSSV  840
NATNVTAAAM PLPAQMPSVG KEASNSASST PTNVLLPKGV EIKTGDLIGL EFKPEKLRKY  900
NEHVISSLFG DRNYQCKLCG ERFSLEDELR SHTTCRGSRE SETIYAGMAP KKWYPSKNSY  960
IDGSHEMEDS AEAFDVDLSS GEEVCEFMVP ADESQIICAL CGEPFDDFYS IEKGDWMYKD  1020
TVFLDSPNGE GSCGSNVESK EQVPIVHVRC MPRGSNDGME VD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sz9_A	2e-14	65	169	8	112	PCF11 protein
1sz9_B	2e-14	65	169	8	112	PCF11 protein
1sz9_C	2e-14	65	169	8	112	PCF11 protein
1sza_A	2e-14	65	169	8	112	PCF11 protein
1sza_B	2e-14	65	169	8	112	PCF11 protein
1sza_C	2e-14	65	169	8	112	PCF11 protein
2bf0_X	2e-14	65	169	13	117	PCF11
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801398.1	0.0	uncharacterized protein LOC112880881
TrEMBL	A0A2T8KP01	0.0	A0A2T8KP01_9POAL; Uncharacterized protein
STRING	Pavir.Ba02617.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7261	7	8

Link Out ? help Back to Top
Phytozome	Pahal.B01902.1