PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B01540.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 301aa MW: 34242.5 Da PI: 7.265

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B01540.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.2	6.6e-19	71	151	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA +v Fs+rks +k++ ++++ ++ +vCsk+g+ + + +r +trtgC+a++ + +++g w v+++eleHnH la Pahal.B01540.1 71 EMYNTYAGKVRFSIRKSDTKRR-VDKTMSSKLLVCSKQGHGDAGS--------SRGSTRTGCNARILFSISREGIWTVQQVELEHNHYLA 151 58************998876.8888********998865........469*****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.7E-15	71	151	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
EESATIDDQI GDDQQKTQTS HIASLAISEN GQGNDNTIPK STAHQDVNEY GPPVIVPEVG 60 MSFESGDIAY EMYNTYAGKV RFSIRKSDTK RRVDKTMSSK LLVCSKQGHG DAGSSRGSTR 120 TGCNARILFS ISREGIWTVQ QVELEHNHYL ASPDKIHMLR SQRHVIEADR KLISQIREAG 180 MKPSQVFRFM KQFYGRPENV PFLKVDCYNE IGRERKKYLE CNDAQTLLEY LKNKQIEDPK 240 IFYAIEINKE NGRITNFFWT DGQSIMDYKC FGDAVSFDTT FQTNKFEMPF APILGTNHHK 300 *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823117.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q10HU3	1e-122	Q10HU3_ORYSJ; Os03g0576100 protein
STRING	Sb06g007340.1	1e-122	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-47	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.B01540.1