PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B01538.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 27102 Da PI: 9.4244 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.1e-17 | 102 | 151 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrd + ng +r++lg+f++ae Aa a+++a+++ +g Pahal.B01538.1 102 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSAEAAAMAYDQAALSARG 151 57******.**********44465..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.773 | 101 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-30 | 101 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 102 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-12 | 102 | 151 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-14 | 102 | 160 | No hit | No description |
PRINTS | PR00367 | 4.1E-8 | 102 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-27 | 102 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
METKSTRAPP PFHPPHMEQH GVHGFYLYSD YAAAAATSSS SSSSSSDSLP FGTGCCGDEV 60 PEPAVSGYWR RRADAAEVSA AVPAAAAEAG EVAPGSSSKG AFIGVRRRPW GRFAAEIRDS 120 TRNGARVWLG TFDSAEAAAM AYDQAALSAR GPGAALNFPV ERVQESLRAL ALGGGGASGA 180 GAAASAAGSP VLALKSRHSK RKRRKKSEIA AAAAAAAANG AVAPGRSRSR SRSAAAAAEQ 240 QRFVVELEDL GADYLEELLR ISES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-23 | 100 | 161 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 204 | KRKRRK |
2 | 199 | 205 | KRKRRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727702 | 1e-136 | KJ727702.1 Zea mays clone pUT5641 AP2-EREBP transcription factor (EREB128) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803964.1 | 9e-98 | ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A2S3GXB4 | 0.0 | A0A2S3GXB4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba02374.1.p | 2e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-21 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B01538.1 |