PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01341.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 290aa    MW: 32320.4 Da    PI: 5.257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01341.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51181431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelv +yL+++++g++ ++  +i+evd+y+++PwdLp+++  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v + 
  Pahal.B01341.1  18 LPPGFRFHPTDEELVAHYLCARAAGRSPPV-PIIAEVDLYRFDPWDLPERALFGRREWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKPVQH- 110
                     79*************************999.88***************87778999*************************************9. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g+++g+kk Lvfy+g+ p+g+kt+W+mheyrl
  Pahal.B01341.1 111 GGRTMGIKKALVFYHGKPPRGVKTEWIMHEYRL 143
                     9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-6414169IPR003441NAC domain
PROSITE profilePS5100559.69318169IPR003441NAC domain
PfamPF023659.8E-2719143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVTAAATQRR DAEAELNLPP GFRFHPTDEE LVAHYLCARA AGRSPPVPII AEVDLYRFDP  60
WDLPERALFG RREWYFFTPR DRKYPNGSRP NRAAGTGYWK ATGADKPVQH GGRTMGIKKA  120
LVFYHGKPPR GVKTEWIMHE YRLADAGGKK PGNGSLRLDD WVLCRLYNKK NEWEKMQQQK  180
EKAMELEASL SHSHSDTRTP ESEIDDETFP ELGSLPEFDD MGPAPALAPA GAVLPKEEVQ  240
DFGNLGGDDW LAGINLDYLQ MPGDADFFGN MLASPMAPKA EQDGGFPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-9581755174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417450.0BT041745.2 Zea mays full-length cDNA clone ZM_BFb0043E11 mRNA, complete cds.
GenBankDQ2442800.0DQ244280.1 Zea mays clone 4143 mRNA sequence.
GenBankKP2835360.0KP283536.1 Zea mays NAC protein (Zma000584) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804128.10.0NAC domain-containing protein 67-like
SwissprotQ7EZT11e-118NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLA0A2S3GWW50.0A0A2S3GWW5_9POAL; Uncharacterized protein
TrEMBLA0A2T7EMR00.0A0A2T7EMR0_9POAL; Uncharacterized protein
STRINGGRMZM2G079632_P011e-180(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-83NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]