PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00845.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 346aa MW: 38104.9 Da PI: 10.2413

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00845.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.1	8e-10	198	239	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++ +++++rtgCka++k+++++++ w++ ++ +H+H+l+ Pahal.B00845.1 198 NPKKANSSTQRTGCKAMVKLHRSNENGWHIGEFIADHTHPLT 239 56788999********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-7	199	239	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MIRLEKPRCE LRAAAVAVAP EMAGIPPAAD GGHGERHARG LLSRFIRKRR PAPKAKVPRQ 60 GGNGDVTAPA PNAAPGNQPG GRRQWWEREC RGGAGRRSGE RRRGYGGGVR WRPGQRGAQS 120 GGAVDGAAQA CGWVWRPGFG SIPDERMPKP GCVSAYELTL RNYAEKKSGV VINPAVGTSF 180 DSRAEAYEFY NLYSWEGNPK KANSSTQRTG CKAMVKLHRS NENGWHIGEF IADHTHPLTG 240 DCSEKSDWPS HKHLDPYTKN LGLHLRNNNM DLSKINGIIA SFFGAMENVL FNKRALKSLC 300 ARISKENSDD DVCKALELFH SFRRDDPSFR YSVEVDNESR IKTLL*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MIRLEKPRCE LRAAAVAVAP EMAGIPPAAD GGHGERHARG LLSRFIRKRR PAPKAKVPRQ  60
GGNGDVTAPA PNAAPGNQPG GRRQWWEREC RGGAGRRSGE RRRGYGGGVR WRPGQRGAQS  120
GGAVDGAAQA CGWVWRPGFG SIPDERMPKP GCVSAYELTL RNYAEKKSGV VINPAVGTSF  180
DSRAEAYEFY NLYSWEGNPK KANSSTQRTG CKAMVKLHRS NENGWHIGEF IADHTHPLTG  240
DCSEKSDWPS HKHLDPYTKN LGLHLRNNNM DLSKINGIIA SFFGAMENVL FNKRALKSLC  300
ARISKENSDD DVCKALELFH SFRRDDPSFR YSVEVDNESR IKTLL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155776.1	1e-67	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2X0SJT3	2e-67	A0A2X0SJT3_WHEAT; Uncharacterized protein
STRING	Pavir.Ba03654.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Link Out ? help Back to Top
Phytozome	Pahal.B00845.1