PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00800.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 310aa    MW: 34532.7 Da    PI: 6.4378
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35351272103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d+++++++sw e+g +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg k+ll++
  Pahal.B00800.1  35 FLTKTFQLVDDPRTDHVVSWGEDGATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFKKGAKHLLSE 120
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  Pahal.B00800.1 121 IHRRKSS 127
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3725118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-5831124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3432124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-203558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-3135124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAFLVERCRG GGKMAVSMDV EMSSHAAKPV VPAPFLTKTF QLVDDPRTDH VVSWGEDGAT  60
FVVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA DRWEFANEFF KKGAKHLLSE  120
IHRRKSSSCS QPPPQLQPLP PHQPYLSLFS PPQQYPSPPA CYRVQEEDHG GKDFLATLSE  180
DNRELRRRNS LLLSELAHMR RLYNDIIYFL QNHVEPVPPP PAAAATGCRL VELGSADTSP  240
PTTRRPRGDD DEAPVKLFGV RLNDGKKRKA QAAVLLEEKG DGDDQCDGVG DSDGDGDHNG  300
HGDDQGSET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-24101244129Heat shock factor protein 1
5d5v_B7e-24101244129Heat shock factor protein 1
5d5v_D7e-24101244129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432490.0AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797236.10.0heat stress transcription factor B-4d-like
SwissprotQ10KX81e-107HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A2S3IQD90.0A0A2S3IQD9_9POAL; Uncharacterized protein
STRINGPavir.Ib01755.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-72heat shock transcription factor B4