PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00753.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 152aa    MW: 16347.3 Da    PI: 8.7726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00753.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000793353323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C++ F ++  L  H++ H
  Pahal.B00753.1 33 CTYCDRKFHTSQALGGHQNAH 53
                    ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.98E-72573No hitNo description
PROSITE profilePS5015711.0113158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MERRPEPELD LELTLLHPGA SAAPEEPPGF FLCTYCDRKF HTSQALGGHQ NAHKYERTLA  60
KRRREISASM RLHGRSGARA DPPGSAGVAI NLLSAGAEPA GRARTMDTQK AAPDPSLAWL  120
SGSSLLQHNI SSSSPERRAG RADELDLSLR L*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792064.11e-105zinc finger protein 11-like
TrEMBLA0A2S3IQR31e-104A0A2S3IQR3_9POAL; Uncharacterized protein
STRINGPavir.J17021.1.p5e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-14zinc finger protein 2