PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00745.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 313aa    MW: 33820.4 Da    PI: 8.5788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00745.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv +v+++G+g+W+++++t g+ R+ k+c++rw +yl
   Pahal.B00745.1 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPATTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.39.7e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +Ed l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
   Pahal.B00745.1  67 RGGFSDQEDRLIVHLQALLGNR-WAAIASYLP-YRTDNDVKNYWNTHL 112
                      7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.975965IPR017930Myb domain
SuperFamilySSF466891.5E-2911108IPR009057Homeodomain-like
SMARTSM007177.1E-121363IPR001005SANT/Myb domain
PfamPF002499.7E-161461IPR001005SANT/Myb domain
CDDcd001672.19E-101661No hitNo description
Gene3DG3DSA:1.10.10.609.3E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129419.23966116IPR017930Myb domain
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1367112IPR001005SANT/Myb domain
CDDcd001675.89E-1270112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PATTGLMRCS KSCRLRWTNY  60
LRPGIRRGGF SDQEDRLIVH LQALLGNRWA AIASYLPYRT DNDVKNYWNT HLKKKLLVQQ  120
HQHQQRAPST LSPPPNKGQW ELRLQTDIDL ARRALRDALS VPLAGKMMLS GTRGATAPAP  180
PPLPAESPPP ALVQAYALTA RDVSCMLDGW ARPTPGKKSG SPATPPPPVA AESASGSTSE  240
LTECSASISS APNRRAAPVA AQLFVREEKA AAGGEEVPLS EIESWLLEDG GGEQKPAHDG  300
LLLDAALYNF GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9628481e-176EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794825.10.0transcription factor MYB30-like
TrEMBLA0A2S3IQ770.0A0A2S3IQ77_9POAL; Uncharacterized protein
STRINGSi038845m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-81myb domain protein 30