PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00684.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 315aa MW: 33592.6 Da PI: 4.6298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00684.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.9	0.00021	263	302	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+ri + + Lr+++P +k + ++L +A+ Y+++L Pahal.B00684.1 263 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLQYL 302 9******************97...333..3458999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.921	253	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-6	263	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-7	263	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00161	263	307	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGDKDNPWCH WPNSPWKFNT ESSAGNICPP DVGLVDANLV ALPTCLNTVA APVPFFTASI 60 AERPLPMAPR FVTTLVPSLE LSALYPSHKR PLVFYQESHT PIAAPLVRKG TLDPVPELQG 120 SNETNLTDVG AEETEGIHEN TDEINALLDS DSDEGCEKVQ ELNRVRRPSP AENDTLSVES 180 VASAGASAAG SAQPAKKRRL SSGTDKSVVD TASSARLDHS IEQKLLANGC DAQSCCIGEV 240 ESDHKFALGE GEAAEGDNPD DQKRRRERIQ ETVAALRKIV PGGIAKDATA VLDEAICYLQ 300 YLKLKVKTLG AASL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795193.1	0.0	transcription factor SAC51-like
TrEMBL	A0A2S3IQ56	0.0	A0A2S3IQ56_9POAL; Uncharacterized protein
STRING	Pavir.Ia03117.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10031	18	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00120.1	2e-10	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.B00684.1