PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00594.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 315aa    MW: 34804.9 Da    PI: 10.3623
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00594.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.73.9e-33158214158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rakle ++kl  k+rkpylheSRh+hA++R Rg+gGrF
  Pahal.B00594.1 158 EEPIFVNAKQYHAILRRRQMRAKLETQNKL-VKGRKPYLHESRHRHAMKRVRGPGGRF 214
                     69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-36156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.23157217IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.1E-28159214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-24160182IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860162182IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-24191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MMPSGNKMLL QEMDGNPFHT MHNYDFLSGN GYSMKQLTRS NSDKDSLSKK SEQSRQDLSA  60
VSDSSLNGQH TPTQSDNNDS HRKRDQGMVK TVLSFGNPEA AFPTQKFDYS QPFACASYTA  120
DPYYCGFLTG YTSNAIVHPQ INGAANSRVP LPIEPAAEEP IFVNAKQYHA ILRRRQMRAK  180
LETQNKLVKG RKPYLHESRH RHAMKRVRGP GGRFLNKKEL QEQRRRQKDL PSLQTPTGGV  240
GKMAFGRNLC PENSASHSPS TSSGVSSVSN GGGTVAHQEH ISFSSTNFLP SMSFRGENGS  300
EKMAVNGVRH RTPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-23158236272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198207RHRHAMKRVR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797222.10.0nuclear transcription factor Y subunit A-3-like isoform X3
RefseqXP_025797223.10.0nuclear transcription factor Y subunit A-3-like isoform X3
TrEMBLA0A2T8I4I90.0A0A2T8I4I9_9POAL; Uncharacterized protein
STRINGSi036728m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-34nuclear factor Y, subunit A6