PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00594.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 315aa MW: 34804.9 Da PI: 10.3623 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.7 | 3.9e-33 | 158 | 214 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rakle ++kl k+rkpylheSRh+hA++R Rg+gGrF Pahal.B00594.1 158 EEPIFVNAKQYHAILRRRQMRAKLETQNKL-VKGRKPYLHESRHRHAMKRVRGPGGRF 214 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.6E-36 | 156 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.23 | 157 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.1E-28 | 159 | 214 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.2E-24 | 160 | 182 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 162 | 182 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.2E-24 | 191 | 214 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MMPSGNKMLL QEMDGNPFHT MHNYDFLSGN GYSMKQLTRS NSDKDSLSKK SEQSRQDLSA 60 VSDSSLNGQH TPTQSDNNDS HRKRDQGMVK TVLSFGNPEA AFPTQKFDYS QPFACASYTA 120 DPYYCGFLTG YTSNAIVHPQ INGAANSRVP LPIEPAAEEP IFVNAKQYHA ILRRRQMRAK 180 LETQNKLVKG RKPYLHESRH RHAMKRVRGP GGRFLNKKEL QEQRRRQKDL PSLQTPTGGV 240 GKMAFGRNLC PENSASHSPS TSSGVSSVSN GGGTVAHQEH ISFSSTNFLP SMSFRGENGS 300 EKMAVNGVRH RTPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-23 | 158 | 236 | 2 | 72 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 207 | RHRHAMKRVR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797222.1 | 0.0 | nuclear transcription factor Y subunit A-3-like isoform X3 | ||||
Refseq | XP_025797223.1 | 0.0 | nuclear transcription factor Y subunit A-3-like isoform X3 | ||||
TrEMBL | A0A2T8I4I9 | 0.0 | A0A2T8I4I9_9POAL; Uncharacterized protein | ||||
STRING | Si036728m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 1e-34 | nuclear factor Y, subunit A6 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00594.1 |