PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00568.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 427aa MW: 44075.3 Da PI: 9.4348

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00568.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	103.1	1.7e-32	100	159	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ l cprC s++tkfCyynnyslsqPryfC+aCrryWt+GGalr++P ++ r+++++ Pahal.B00568.1 100 PESGLVCPRCRSAETKFCYYNNYSLSQPRYFCRACRRYWTHGGALRDLPFSSSVRRRRRN 159 677899***********************************************9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	84	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-29	104	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.701	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MLDAVRRRKQ TTKEDQFSTM PHHGRIVPTH GGGGRCGKEA HYSKQHHQLP GPPGAPPMAP 60 RPAVPAEASV SAGGGEYASS SWVKPGCMME LARLAKIPQP ESGLVCPRCR SAETKFCYYN 120 NYSLSQPRYF CRACRRYWTH GGALRDLPFS SSVRRRRRNK PPSNKHESSE VSSCCASGKG 180 GRASPSSSSG ASAVPGGGGR AAAAATPVMH TQPLEQLASL AVAVGTERHR TVASRLWLPA 240 GHSSLQGPVG YRHQLGNITA GVATTIRLEH QRYLPQRQPF SFLGYGDAVS APTSAVGPLG 300 ASDAGGGSDT EAGGFAGGHT LAAAISRVLG PAALTTQSAS EMMAANPPIP STEMTGTLTT 360 TSSPVEFLVE SGLSHLLGSG SWPACSYGSC SAGNDSGGST SCTAAPGNSV WPDPSGFTSS 420 SSGTML*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MLDAVRRRKQ TTKEDQFSTM PHHGRIVPTH GGGGRCGKEA HYSKQHHQLP GPPGAPPMAP  60
RPAVPAEASV SAGGGEYASS SWVKPGCMME LARLAKIPQP ESGLVCPRCR SAETKFCYYN  120
NYSLSQPRYF CRACRRYWTH GGALRDLPFS SSVRRRRRNK PPSNKHESSE VSSCCASGKG  180
GRASPSSSSG ASAVPGGGGR AAAAATPVMH TQPLEQLASL AVAVGTERHR TVASRLWLPA  240
GHSSLQGPVG YRHQLGNITA GVATTIRLEH QRYLPQRQPF SFLGYGDAVS APTSAVGPLG  300
ASDAGGGSDT EAGGFAGGHT LAAAISRVLG PAALTTQSAS EMMAANPPIP STEMTGTLTT  360
TSSPVEFLVE SGLSHLLGSG SWPACSYGSC SAGNDSGGST SCTAAPGNSV WPDPSGFTSS  420
SSGTML*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	159	VRRRRRNK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792039.1	0.0	dof zinc finger protein 3-like
TrEMBL	A0A2S3IPP9	0.0	A0A2S3IPP9_9POAL; Uncharacterized protein
STRING	Si036341m	1e-123	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22884	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.B00568.1