PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00522.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 402aa MW: 43420.2 Da PI: 6.238 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 256 | 278 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cg+ F + L H +H Pahal.B00522.1 256 YECPGCGRAFQSYQALGGHRASH 278 99********9999888888777 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 337 | 359 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Pahal.B00522.1 337 FECPICFKVFGSGQALGGHKRSH 359 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 8.1E-5 | 14 | 36 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.0E-7 | 14 | 36 | No hit | No description |
SMART | SM00355 | 0.6 | 14 | 36 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.286 | 14 | 37 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 16 | 36 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.0E-7 | 251 | 278 | No hit | No description |
Pfam | PF13912 | 8.0E-11 | 255 | 280 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 256 | 278 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.492 | 256 | 283 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 258 | 278 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-11 | 337 | 360 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 337 | 359 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.889 | 337 | 360 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 339 | 359 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MGDAAVLSSS ATRHSCKVCR KGFPCGRSLG GHMRSHSLAE VETAVEDDAD DNGEEQQQQQ 60 RRGSDCLMVP GAGGYGLREN PKKTRRLSGL DGGDESGGRQ DECGHGELLS PCAPEVGHER 120 RHAPGAGMEV EAEREQEDAM LIPTEPAVGL MPAPRRRRRS MRVPAPAPPP AFDKEPEDVA 180 LCLIMLSRDI LHRRDSTVTG AEYSPEKDRR RRDYHHDTDS DDASALFQYA DVEISTKTNK 240 RKPNRSLAGD EKRGRYECPG CGRAFQSYQA LGGHRASHKR INSNCSIAKV PPDQAELSVE 300 TNASFNTASP DTDYATDVAH TTAVVALKAK PQKAIKFECP ICFKVFGSGQ ALGGHKRSHS 360 IAGELYERAH ADGDAGIDEA EQPMIADGFL DLNLPAPGAE N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 212 | DRRRRD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792036.1 | 0.0 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A2S3IPK7 | 0.0 | A0A2S3IPK7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03028.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-21 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00522.1 |