PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00475.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 367aa    MW: 41222.9 Da    PI: 4.6506
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00475.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35481382101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++ ++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  Pahal.B00475.1  48 FLTKTYDMVDDPATDPIVSWSATNNSFVVWDPHAFATVLLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKN 133
                     9********************999*****************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  Pahal.B00475.1 134 IRRRK 138
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-6444137IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.03E-3744137IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-3944137IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.1E-3248137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-204871IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-2099111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDPMLNPVKE ESHGDGGLLP GAAAGDGPSA AAAPKPMEGL HDAGPPPFLT KTYDMVDDPA  60
TDPIVSWSAT NNSFVVWDPH AFATVLLPRH FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN  120
EGFLRGQRHL LKNIRRRKPP AQNASNQQSL GSYLEVGHFG YDAEIDRLKR DKQLLMAEVV  180
KLRQEQQNTK ANLKAMEDRL QGTEQKQQQM MAFLARVMRN PEFLKHLVSQ NEMRKELQDA  240
ISKKRRRRID QGPEVDDLGT SSSLEQGSPV LFDPEDSVEF LVDGIPTDLE SPAFNSQGLV  300
EPQDIDLGTS EHQQDMPQEE LTDNFWEQLL NEGLGEENDN PVVEDDMNVL SEKMGYLNSD  360
GPTSRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-274313712120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247KKRRRR
2243248KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560060.0BT056006.1 Zea mays full-length cDNA clone ZM_BFc0120E04 mRNA, complete cds.
GenBankEU9567000.0EU956700.1 Zea mays clone 1571069 heat shock factor protein HSF30 mRNA, complete cds.
GenBankJX4699680.0JX469968.1 Zea mays subsp. mays clone UT3231 HSF-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799458.10.0heat stress transcription factor A-2b-like
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A2T8KMV50.0A0A2T8KMV5_9POAL; Uncharacterized protein
STRINGSi030256m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-107heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]