PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00358.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 655aa    MW: 70233.5 Da    PI: 4.2919
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00358.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.72.5e-30221241100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpa..eqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                     +C aC++lrr+C+++Cv+apyfpa  ++p++fa+vh++FGasn +++l+++ ++ er++a+++lv eA ar+rdP  G+++ +  lq   e++++
  Pahal.B00358.1  22 PCGACRTLRRRCVPGCVFAPYFPAegDEPSRFAAVHRVFGASNAVRMLEDVeRPGERRRAAETLVEEALARVRDPALGCLSYVAVLQMLNEKARE 116
                     7***********************65669**********************55566***********************************9999 PP

          DUF260  93 elallkee 100
                     +++++++e
  Pahal.B00358.1 117 QVDAVRAE 124
                     99998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.52621125IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3122122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MPEDEVEVVS WTAAAQPAAQ VPCGACRTLR RRCVPGCVFA PYFPAEGDEP SRFAAVHRVF  60
GASNAVRMLE DVERPGERRR AAETLVEEAL ARVRDPALGC LSYVAVLQML NEKAREQVDA  120
VRAEIAAEFG PEAASEPVDI QAAGPEVELE AKAQAERALA HAREQDAKML AARRAVDRKW  180
RQLRQAARRA AGERLRLPGG RWQDTNNQMA ETENTAAAAA AGESSSEQTM LTPQAAAVTE  240
LDSPEGNGHP QESAPAAGAN QHRHLASQHA GAEQGIPEGY GHGQLHQLMA ETQQSTAGAE  300
ASREEALTSE QAPAAALQHH DSATTQLDGT GTSFLDRHQV AAAGELSKKL DTMIRRFAAA  360
QQYDDPAAAR YAWMGPDVSP RLQQPPQPED TVPQVAEARQ EAATAEVASD QDLMMMLVPQ  420
IAEAEAAAEQ DVMMQLLAAG APQYDDLASQ YDDDTEVDIT LGYGHRDMYQ QTVQQLAAAA  480
KVAREQGIMA HIATAELSRE QEMIVRQASQ PEMTILLQAA AAQYSDTELD IWLGQGHPYR  540
HQPTVQELET NTTTVQQLEP STTTVQQVGG YMDGEHGSDS GVTVAFQLPG SAEAAPFLVE  600
QEPPPQGQTA SALGLEVDSS LPPLPPSLGG PHGQQSTDGG DEDQCSDLTE YLFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-28131252111LOB family transfactor Ramosa2.1
5ly0_B4e-28131252111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803413.10.0uncharacterized protein LOC112882549
TrEMBLA0A2S3GVL30.0A0A2S3GVL3_9POAL; Uncharacterized protein
STRINGPavir.Ba02246.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16457913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.46e-30LBD family protein