PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00341.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 262aa    MW: 27686 Da    PI: 10.0764
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00341.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA91.41.2e-28130186158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQ+++Il+RR +Ra+++++ +  ++srkpylheSRh hAlrR+RgsgGrF
  Pahal.B00341.1 130 EEPVYVNAKQFNGILRRRLARARAARDLRA-SRSRKPYLHESRHLHALRRARGSGGRF 186
                     69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-31128189IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.823129189IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-27131186IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-21132154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-21163186IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRSAAAMGFQ EHGLAFQVIT DGRGHGGGAT AAPWWAAAAA QGFAAKFPIS SGDSDPPQDL  60
KYHEPSAAAI AAYPELHKYQ HGPFDLALGQ STVWSNNAGA GQGQSYGLYS PYGAQAMHGR  120
VLLLPAIAAE EPVYVNAKQF NGILRRRLAR ARAARDLRAS RSRKPYLHES RHLHALRRAR  180
GSGGRFLNTR SLAAGDPPPP FASTPLGGSE PAEDNASKAA RLHPVQDRQD VFLSSLTNMA  240
GDGEARWAGA APRGCCDLLK A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-17130188261HAPB protein
4g92_A1e-17130188261HAPB protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682175e-72EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
GenBankEU9750235e-72EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799912.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2S3GW350.0A0A2S3GW35_9POAL; Uncharacterized protein
STRINGPavir.Bb00319.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-22nuclear factor Y, subunit A10