PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00341.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 262aa MW: 27686 Da PI: 10.0764 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 91.4 | 1.2e-28 | 130 | 186 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQ+++Il+RR +Ra+++++ + ++srkpylheSRh hAlrR+RgsgGrF Pahal.B00341.1 130 EEPVYVNAKQFNGILRRRLARARAARDLRA-SRSRKPYLHESRHLHALRRARGSGGRF 186 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.0E-31 | 128 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.823 | 129 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.1E-27 | 131 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.5E-21 | 132 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.5E-21 | 163 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MRSAAAMGFQ EHGLAFQVIT DGRGHGGGAT AAPWWAAAAA QGFAAKFPIS SGDSDPPQDL 60 KYHEPSAAAI AAYPELHKYQ HGPFDLALGQ STVWSNNAGA GQGQSYGLYS PYGAQAMHGR 120 VLLLPAIAAE EPVYVNAKQF NGILRRRLAR ARAARDLRAS RSRKPYLHES RHLHALRRAR 180 GSGGRFLNTR SLAAGDPPPP FASTPLGGSE PAEDNASKAA RLHPVQDRQD VFLSSLTNMA 240 GDGEARWAGA APRGCCDLLK A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 1e-17 | 130 | 188 | 2 | 61 | HAPB protein |
4g92_A | 1e-17 | 130 | 188 | 2 | 61 | HAPB protein |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968217 | 5e-72 | EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds. | |||
GenBank | EU975023 | 5e-72 | EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799912.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A2S3GW35 | 0.0 | A0A2S3GW35_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb00319.1.p | 1e-129 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14663 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 2e-22 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00341.1 |