PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00308.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 463aa MW: 48724.9 Da PI: 9.7002 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.2 | 8.5e-40 | 59 | 209 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec....... 73 g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++ + Pahal.B00308.1 59 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdaatgfpahpasaagkD------Lpaladap 147 689*************************************************************99998866654444431......12233334 PP TCP 74 eaesssssasnsssg.kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 ++++ ++++++++ ++ + + +s+ s++s+ s+l+l++ esr kar+rarer++ ++ Pahal.B00308.1 148 HDDDDDDQDQHQHHHhQQLTRSGCSSTSETSKGSVLSLSRsESRVKARERARERSAAARDKD 209 333333333334444266666679*****************************998776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-41 | 60 | 205 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.189 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.992 | 188 | 208 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MEAVVAGDGR SKRGRVKAAD GAGPEPGPKR SRAAPAAALP APWAQQHPAS RIYRVSRASG 60 GKDRHSKVYT AKGIRDRRVR LSVATAIQFY DLQDRLGYDQ PSKAIEWLIK AAAAAIDKLP 120 SLDAATGFPA HPASAAGKDL PALADAPHDD DDDDQDQHQH HHHQQLTRSG CSSTSETSKG 180 SVLSLSRSES RVKARERARE RSAAARDKDK DPADDAATGR RAAPTASAQA ASFTELLTGM 240 AAATAAAGSA PAEHKQQQQQ QQQQHQSSAP WQAMAVPATA DYIGFAQPRK AAGHAMAHSF 300 ASPAPHLGNI ASIAMAPAQH FGLASGAVTI ASGGGGGGEP HAEMTQFSFL QDHFMPVHAA 360 PASGPAGDYN LNFSMSSGLV GVNSRGTLQS NSQPHISGHH HHHHHHNQQL QRLSTPLDAP 420 NIPFLFSPAA AVTTPTTAES QFAAFQLWNG FQHADMKEKG KN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-30 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-30 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU190456 | 1e-153 | EU190456.1 Zea mays RFLP probe php20581 (CBM 2.10) genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803763.1 | 0.0 | transcription factor PCF6-like | ||||
TrEMBL | A0A3L6QSQ6 | 0.0 | A0A3L6QSQ6_PANMI; Transcription factor PCF6 | ||||
STRING | Pavir.Ba03864.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 3e-36 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00308.1 |