PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00277.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 395aa MW: 41609.5 Da PI: 4.962

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00277.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.3	2.7e-18	204	250	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq Pahal.B00277.1 204 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 250 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.95E-19	195	254	No hit	No description
SuperFamily	SSF47459	1.19E-21	198	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.743	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-15	204	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-22	204	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-18	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MDGGERPAAT QKRPFPPEGE LVELMWQDGA VVAHSQAQRA FAGAGNTGAS GVTGEAPAAW 60 LPGAGGALGG DVYSQLWQSI AQADGRVGAD ARARPPARSG NSAAGSSRTA GEVGSSFCGS 120 NLVAAALHLD DDIDDVAAPP PPPPDEPCAC GGASMSSGWN SNGLLKRSRD EFDGRSEDAD 180 FDTVDETPPS RRPASKRRTR AAEVHNMSER RRRDRINEKM RALQELVPHC NKTDKASILD 240 EAIEYLKSLQ MQVQIMWMSS GMAPMMLPGA HQLMPPMSMG LNSACMPPAA QFLSQIQRVP 300 PFLSNPLPNQ IPQISPAATS APNVTNQVQS NRMAQPRNPF LHPNDALTST PQLPSLFGYG 360 PQMAQENEIQ ELLACTAAPA LGADPQSSSD GTGT*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MDGGERPAAT QKRPFPPEGE LVELMWQDGA VVAHSQAQRA FAGAGNTGAS GVTGEAPAAW  60
LPGAGGALGG DVYSQLWQSI AQADGRVGAD ARARPPARSG NSAAGSSRTA GEVGSSFCGS  120
NLVAAALHLD DDIDDVAAPP PPPPDEPCAC GGASMSSGWN SNGLLKRSRD EFDGRSEDAD  180
FDTVDETPPS RRPASKRRTR AAEVHNMSER RRRDRINEKM RALQELVPHC NKTDKASILD  240
EAIEYLKSLQ MQVQIMWMSS GMAPMMLPGA HQLMPPMSMG LNSACMPPAA QFLSQIQRVP  300
PFLSNPLPNQ IPQISPAATS APNVTNQVQS NRMAQPRNPF LHPNDALTST PQLPSLFGYG  360
PQMAQENEIQ ELLACTAAPA LGADPQSSSD GTGT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	212	KRRTRAAEVHNMSERRRR
2	208	213	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804058.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
Swissprot	Q10CH5	8e-98	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A2S3GVP6	0.0	A0A2S3GVP6_9POAL; Uncharacterized protein
STRING	Pavir.Ba03888.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	5e-34	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Pahal.B00277.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]