PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00269.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 1031aa MW: 113602 Da PI: 10.05 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.6e-08 | 397 | 442 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT++E+ +l+ v++ G+ +W Ia t+g+ Rt+ qc r+q Pahal.B00269.2 397 REAWTAQEETKLLLIVQEKGMYNWINIAVTLGTYRTPFQCLVRYQR 442 789*****************************99*******99995 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 451 | 495 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++WT+eEd++l av+ +G + W ++++ + gRt++qc +rw+k l Pahal.B00269.2 451 KAWTKEEDLQLQAAVETFGEK-WQLVSASLD-GRTGNQCSNRWRKTL 495 58*******************.*********.************975 PP | |||||||
3 | Myb_DNA-binding | 34.9 | 3.7e-11 | 503 | 547 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW +Ed++l vk+ G+g+W++Ia ++ gRt qc +rw + Pahal.B00269.2 503 GRWHMDEDKRLMVSVKLIGSGSWSRIAPFIP-GRTQTQCHERWCNI 547 89*****************************.***********996 PP | |||||||
4 | Myb_DNA-binding | 46.8 | 6.9e-15 | 555 | 598 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W +eEd +l+ av ++G+ W++Ia +++ gR +++c rw+k+ Pahal.B00269.2 555 GKWRPEEDSKLLAAVSEFGPC-WSKIAMMIP-GRNDNMCSRRWNKL 598 79*****************88.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.866 | 293 | 389 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.5E-4 | 297 | 393 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 299 | 316 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00135 | 362 | 389 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 363 | 404 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.75E-14 | 373 | 441 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.606 | 392 | 444 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.5E-6 | 396 | 446 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-5 | 397 | 442 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-11 | 405 | 450 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.37E-21 | 429 | 498 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.195 | 445 | 499 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-13 | 449 | 497 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 451 | 494 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-17 | 451 | 497 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.35E-11 | 452 | 495 | No hit | No description |
PROSITE profile | PS50090 | 9.93 | 497 | 548 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-16 | 500 | 548 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-24 | 500 | 595 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-7 | 501 | 550 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-10 | 503 | 548 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.38E-7 | 504 | 548 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-19 | 549 | 602 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.463 | 549 | 603 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-13 | 553 | 601 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-13 | 555 | 598 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-11 | 556 | 598 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1031 aa Download sequence Send to blast |
MDFYSDDSDP DIDEDLREDL DALRRSCILS GADPDAAVAQ VSSACLAGPS TPALAAAGGN 60 DGLSSDDDED LALVRSIREN LHRLNRASPG DAAGGGDASS SPRPICTWPP SDTDEDEDDL 120 ETLRAIQRRF SHYHSSTSTT SPKTMKPEAS QGVHSELFAD RNDDEFAAHK QNTKAPNRTG 180 FPKAALLLVD ALKKNRACQK FIRRKLINIE AKIEENKDLG DRVKCLLGYQ LSCRRSASRT 240 LSQKEDPRVR LISSRKPTRL SEKNNNRKMP ALFLGPAENP HVSKYKMVLE QFPMSFKKQP 300 WSDVEKDKLA RGIKQQYQET LILDSLNNGS AIGDFSAVDM AYALTNAAGN FEVTPESLRS 360 VLPLINWDKI SAMYLPGRSG AECESRWLNC DDPLINREAW TAQEETKLLL IVQEKGMYNW 420 INIAVTLGTY RTPFQCLVRY QRSLNPHIMN KAWTKEEDLQ LQAAVETFGE KWQLVSASLD 480 GRTGNQCSNR WRKTLHPTRT RVGRWHMDED KRLMVSVKLI GSGSWSRIAP FIPGRTQTQC 540 HERWCNILDP NIDLGKWRPE EDSKLLAAVS EFGPCWSKIA MMIPGRNDNM CSRRWNKLCK 600 HQLPAVKAAI QLKKSVFQTN FVDRAKERPA IAPSDLIALV QSKDDGSGEN TRDRSRKQTK 660 ENLAVSNIVT SSTAPDFVAP DTVSNTISRR PRRKSTGQKS KKQTEENVAV PDGLNGLSSG 720 CSRSRKRKST TGSNAAVQKR MRGSISLDNE AVPIELRGTD SANNAVGTNR IMDPVSVGEE 780 GVVQKRTSPS KPARGNSAEQ KIMTGSIPVG IEAVPIELRG TVSTNNEVGT NTMMDPVSIG 840 DGGVVKKRTT RSKPAGSEGA TRKRRCSISA DNEAGTNMMR DPVSGEEGVV KKRMRRSKPV 900 GNYGAARKTM RASVPVGDEG VVKKRTGSVT TENHGGVTKR KRAPSRRKSA GDNLTAEDVA 960 KASPELGLPS TRSEERVVDA GNIDKGRRKS TPRPKQIDMS EGDADKHSPS TRLANCLSFA 1020 RMKGTDRNRR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-27 | 369 | 596 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-27 | 369 | 596 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 689 | 693 | RPRRK |
2 | 723 | 728 | SRKRKS |
3 | 889 | 895 | VKKRMRR |
4 | 922 | 941 | KKRTGSVTTENHGGVTKRKR |
5 | 1020 | 1029 | RMKGTDRNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800666.1 | 0.0 | uncharacterized protein LOC112880330 | ||||
Refseq | XP_025800667.1 | 0.0 | uncharacterized protein LOC112880330 | ||||
Refseq | XP_025800668.1 | 0.0 | uncharacterized protein LOC112880330 | ||||
Refseq | XP_025800669.1 | 0.0 | uncharacterized protein LOC112880330 | ||||
Refseq | XP_025800671.1 | 0.0 | uncharacterized protein LOC112880330 | ||||
Refseq | XP_025800672.1 | 0.0 | uncharacterized protein LOC112880330 | ||||
Refseq | XP_025800673.1 | 0.0 | uncharacterized protein LOC112880330 | ||||
TrEMBL | A0A2S3GVX3 | 0.0 | A0A2S3GVX3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb00243.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-145 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00269.2 |