PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00226.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 626aa    MW: 65528.5 Da    PI: 7.6177
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00226.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-12277333155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Pahal.B00226.1 277 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 333
                     78*******************77776664346655.77******************98 PP
2AP247.54.4e-15378427355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.B00226.1 378 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 427
                     9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-14277342IPR016177DNA-binding domain
CDDcd000183.07E-17277341No hitNo description
PfamPF008471.1E-9277333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12278342IPR001471AP2/ERF domain
PROSITE profilePS5103217.359278341IPR001471AP2/ERF domain
SMARTSM003808.3E-23278347IPR001471AP2/ERF domain
PRINTSPR003674.6E-6279290IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17376436IPR016177DNA-binding domain
CDDcd000189.22E-23376437No hitNo description
Gene3DG3DSA:3.30.730.104.2E-18377435IPR001471AP2/ERF domain
SMARTSM003802.9E-33377441IPR001471AP2/ERF domain
PROSITE profilePS5103219.19377435IPR001471AP2/ERF domain
PfamPF008479.0E-10378427IPR001471AP2/ERF domain
PRINTSPR003674.6E-6417437IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MTNNSSNSNG NGTNAAASGW LGFSLSPHMA SAMDDHHHHH VQQQQQQQQH GLFFPSATAA  60
AAAAAAYGLG AGDAVAASAS PYYTPQLASM PLKSDGSLCI MEALRRSDQD HHGPKLEDFL  120
GAAQSQAMAL SLDNAASSFY YYGGAGAGGG HHHGSSFLQP CADLYGGPSA ASLVADEEAA  180
AAATAMASWV AARAGAAESA VLSAAAAGQH QHHHALALSM SSGSLSSCVT AHPGEYGMVA  240
GAAAAMDGGR KRGGAAGGQK QPVHHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC  300
KKEGQTRKGR QGGYDMEEKA ARAYDLAALK YWGPSTHINF PLEDYQEELE EMKNMTRQEY  360
VAHLRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVSGN KDLYLGTFST QEEAAEAYDI  420
AAIKFRGLNA VTNFDITRYD VDKIMASNTL LPGELARRKK DDEAPVADGG VTAAALVQAG  480
NGSATAADTW KVAAALAAAP RAAEHGHVHH QHDVLSGAEA FSVLHHLVTA ADGGGHHSAG  540
GAQHMPMSSA SSLVTSLGNS REASPDRGGG LSMLFSKPPA QQQQAASKPM SPLMPLGSWA  600
SPASARAAAS VSIAHMPVFA AWTDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882630.0BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803955.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2S3GVP30.0A0A2S3GVP3_9POAL; Uncharacterized protein
STRINGPavir.Ba03911.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-121AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]